Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30430
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        32   0.11 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   3.2  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    27   3.2  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.7  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    26   5.7  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 190 FLSLFHTAFSATQHRSYLRITSKSLPRYHWILSSKLW-SVCLLS 318
           F+ +F   FS+ ++  ++ + S S  R+ W    K+W   C LS
Sbjct: 529 FIDIFEQTFSSKKNAKFISMASTSARRFRWKTCLKIWKEACKLS 572


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 100 FITSCILFILSCY*SVHNMASFHKVIVIIGFLSLFHTAFSATQHRS 237
           +  SC+LFI+S Y     + S    +V   F+ L H+  +  + +S
Sbjct: 455 YFVSCLLFIISAYFLTLWLMSLVIAVVTSSFIDLQHSGKNQKEQKS 500


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 20/76 (26%), Positives = 31/76 (40%)
 Frame = +3

Query: 213 FLSYTTSIIFEDHVQEFTTLPLDIVIQAVVSLFAVMWGVLNVAGNLREIPAAAELNAIKW 392
           F+    S IF   + +F+ +  D  IQ      ++ WG    A  L    A+A  N + W
Sbjct: 341 FVCVLMSEIFPSRLGQFSDI--DAWIQVACPRLSIDWGYAFPAPLLTPYEASAAFNVVPW 398

Query: 393 ETQNNLPSFYIFNHRG 440
           +    +  FY  N  G
Sbjct: 399 KEVYPM-DFYATNSLG 413


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 100 FITSCILFILSCY*SVHNMASFHKV 174
           F+  C L+IL C  +V  ++S HK+
Sbjct: 57  FLAKCFLYILRCMSTVSLLSSAHKM 81


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 142 SVHNMASFHKVIVIIGFLSLFHTAFSATQHRSYLRITSKSL---PRYHWI 282
           +VH  A   +   +IG   ++   F+A +  +Y+RI    +   P+ HW+
Sbjct: 283 AVHCKAGLGRTGCLIGAYLIYKHCFTANEVIAYMRIMRPGMVVGPQQHWL 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,453,381
Number of Sequences: 5004
Number of extensions: 70166
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)