Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30430
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0802 + 23313763-23313835,23314100-23314152,23314651-233147...    44   2e-04
10_01_0133 + 1621574-1625779                                           29   6.0  

>12_02_0802 +
           23313763-23313835,23314100-23314152,23314651-23314751,
           23315970-23316063
          Length = 106

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 25/68 (36%), Positives = 37/68 (54%)
 Frame = +3

Query: 255 QEFTTLPLDIVIQAVVSLFAVMWGVLNVAGNLREIPAAAELNAIKWETQNNLPSFYIFNH 434
           +EF++ P+D+++Q ++ L   MW  L V      +   +E N I      NL  F IFNH
Sbjct: 34  EEFSSPPMDVMMQLLLGLALCMWAGLAVPAKFLSVLPHSEENRIV-SLPANL-DFMIFNH 91

Query: 435 RGKALSYD 458
           RG+AL  D
Sbjct: 92  RGRALPSD 99


>10_01_0133 + 1621574-1625779
          Length = 1401

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 121 FILSCY*SVHNMASFHKVIVIIGFLSLFHTAFSATQHRSYLRITSKSLPRYHW--ILSSK 294
           F L+C       A  HK ++ +G   +    FS    ++  R+  K+L R HW  +L SK
Sbjct: 378 FFLACALG-DERAEHHKELLDLGREIVKKLKFSPLAAKTVGRLLKKNLTRRHWSRVLDSK 436

Query: 295 LW 300
            W
Sbjct: 437 EW 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,704,010
Number of Sequences: 37544
Number of extensions: 396816
Number of successful extensions: 793
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)