Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30430
         (828 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)                  29   4.6  
SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22)                  29   6.1  
SB_22162| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               28   8.0  

>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
 Frame = +3

Query: 186 WFSFVIPYSFLSYTTSIIFEDHVQEFTTLPLDIVIQAVVSLFA-VMWG--VLNVAGNLRE 356
           +F + + ++F+  T  I F D ++EF  +  ++V  +V S+F  + WG  +++  G LR+
Sbjct: 88  FFFYPLDFTFVCPTEIIAFSDRIEEFRAINTEVVGCSVDSVFTHLAWGLFIIDDKGVLRQ 147

Query: 357 I 359
           I
Sbjct: 148 I 148


>SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)
          Length = 358

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 59  ETLMQHCIAVFVNNLLQVAFYSF*VVIRVYITWLHFIKLL 178
           E +   C+  F NN LQV FY F +V R    W+++  L+
Sbjct: 258 EGITSGCLT-FSNNFLQVIFYIFPMVPRFGTWWINWAALI 296


>SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22)
          Length = 869

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 271 YHWILSSKLWSVCLLSCG 324
           YHW  S+ +WS CL  CG
Sbjct: 241 YHW--STGIWSACLFDCG 256


>SB_22162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 716 IQINIMLKFIALASNNNTSFLIALTVTGNITKYITSLSLT 597
           I INI++  I +A+  NT+  I +T+  NI   IT  ++T
Sbjct: 108 ININIIINNINIAATINTTKTIIITIIINIVIIITFTAIT 147


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 191  FFRYSIQLSQLHNIDHI*GSRPRVYHVTIGYCHPSC-GQSVC 313
            F ++  Q+S    IDH   + PR+  +   YC  +C  ++VC
Sbjct: 1056 FSKHIEQVSSSKTIDHSVVAPPRLQTINTSYCQAACNNENVC 1097


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,768,040
Number of Sequences: 59808
Number of extensions: 481582
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)