Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30430
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical pr...    41   0.001
U64849-1|AAC48052.3|  936|Caenorhabditis elegans Daf-12, redunda...    30   2.3  
AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical...    29   4.1  
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z35604-3|CAA84679.1|  352|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical
           protein B0334.5 protein.
          Length = 500

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 16/34 (47%), Positives = 25/34 (73%)
 Frame = +1

Query: 157 ASFHKVIVIIGFLSLFHTAFSATQHRSYLRITSK 258
           ++ +++I I+  LSL H A+SA QHR YLR+T +
Sbjct: 3   STIYRLITIVSLLSLLHCAYSAAQHRFYLRLTEQ 36


>U64849-1|AAC48052.3|  936|Caenorhabditis elegans Daf-12, redundant
            with protein 1 protein.
          Length = 936

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 544  FCICYILKIVKFCHIKQIVNDNDVMYLVILPVTVK 648
            FC C    + + CH++ +  DND +Y    P++ +
Sbjct: 897  FCDCGAGTLERHCHLQNVPRDNDTVYDSATPISTE 931


>AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical
           protein Y102A5C.21 protein.
          Length = 355

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 174 YCDHWFSFVIPYSFLSYTTSIIFEDHVQEFTTLPLDIVIQAVV 302
           Y  ++ +  + YSFL+   SI +  HV +   LPL I+   V+
Sbjct: 9   YATNYSNCNLTYSFLASWQSISYTSHVIQLVALPLQILALYVI 51


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 195 FVIPYSFLSYTTSIIFEDHVQEFTTLPLDIVI 290
           F++  SF+SY+TSII       F TL L  VI
Sbjct: 4   FILLLSFISYSTSIINGFSANSFDTLSLASVI 35


>Z35604-3|CAA84679.1|  352|Caenorhabditis elegans Hypothetical
           protein ZK1058.3 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 180 DHWFSFVIPY-SFLSYTTSIIFEDHVQEFTTL 272
           +HW ++++PY +F  Y T ++   HV+ FT L
Sbjct: 218 EHW-TWLVPYWAFWPYETMLLPNRHVERFTDL 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,880,062
Number of Sequences: 27780
Number of extensions: 390439
Number of successful extensions: 967
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)