Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30430
         (828 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03345.1 68418.m00287 expressed protein                             41   0.001
At1g03230.1 68414.m00301 extracellular dermal glycoprotein, puta...    29   3.8  
At1g03220.1 68414.m00300 extracellular dermal glycoprotein, puta...    28   8.7  

>At5g03345.1 68418.m00287 expressed protein
          Length = 104

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = +3

Query: 255 QEFTTLPLDIVIQAVVSLFAVMWGVLNVAGNLREIPAAAELNAIKWETQNNLPSFYIFNH 434
           +EF+  P++++++ ++ L   MW  L   G    I   ++ N   +   N+   F IFNH
Sbjct: 34  EEFSRPPINVILELIIGLALCMWAALTFPGKFLSIHPDSDENRAVFLPDNS--DFMIFNH 91

Query: 435 RGK 443
           RG+
Sbjct: 92  RGR 94


>At1g03230.1 68414.m00301 extracellular dermal glycoprotein,
           putative / EDGP, putative similar to extracellular
           dermal glycoprotein EDGP precursor [Daucus carota]
           GI:285741
          Length = 434

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 266 HVTIGYCHPSCGQSVCCHVGSVECG 340
           +V+  Y  P C  +VC   GS+ CG
Sbjct: 77  YVSTTYRSPRCNSAVCSRAGSIACG 101


>At1g03220.1 68414.m00300 extracellular dermal glycoprotein,
           putative / EDGP, putative similar to extracellular
           dermal glycoprotein EDGP precursor [Daucus carota]
           GI:285741
          Length = 433

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 266 HVTIGYCHPSCGQSVCCHVGSVECG 340
           +V+  Y  P C  +VC   GS  CG
Sbjct: 76  YVSSTYQSPRCNSAVCSRAGSTSCG 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,453,278
Number of Sequences: 28952
Number of extensions: 345290
Number of successful extensions: 677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)