Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30429
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   132   2e-31
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    36   0.025
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    28   5.0  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    28   5.0  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  132 bits (318), Expect = 2e-31
 Identities = 57/65 (87%), Positives = 63/65 (96%)
 Frame = +2

Query: 59  HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 238
           HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLI
Sbjct: 16  HRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLI 75

Query: 239 KNGKK 253
           KNGKK
Sbjct: 76  KNGKK 80



 Score =  117 bits (282), Expect = 5e-27
 Identities = 53/65 (81%), Positives = 59/65 (90%)
 Frame = +1

Query: 247 KERTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 426
           K+ TAFVP DGCLN +EENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KK
Sbjct: 79  KKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKK 138

Query: 427 ERPRS 441
           ERPRS
Sbjct: 139 ERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 35.5 bits (78), Expect = 0.025
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +2

Query: 140 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 235
           G SH KGIVL+ V    K+PNS  RKC  V+L
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 253 RTAFVPRDGCLNHIEEN 303
           RT FVP+DG LN I+EN
Sbjct: 652 RTPFVPKDGVLNVIDEN 668


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 377 TLKRTPGMSPTA*PLRPNPATSTSS 303
           T  RTP  +P A P RP P+ S+++
Sbjct: 38  TTMRTPAATPAAPPTRPTPSRSSAA 62


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 377 TLKRTPGMSPTA*PLRPNPATSTSS 303
           T  RTP  +P A P RP P+ S+++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,421,532
Number of Sequences: 27780
Number of extensions: 290848
Number of successful extensions: 686
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)