Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30429
         (542 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   120   5e-28
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   120   5e-28
At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ...    29   2.7  
At4g34138.1 68417.m04844 UDP-glucoronosyl/UDP-glucosyl transfera...    28   4.6  
At1g32960.1 68414.m04059 subtilase family protein contains simil...    28   4.6  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    28   4.6  
At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase, p...    27   8.1  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  120 bits (290), Expect = 5e-28
 Identities = 55/65 (84%), Positives = 61/65 (93%)
 Frame = +1

Query: 247 KERTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 426
           K+  AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 78  KKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137

Query: 427 ERPRS 441
           E+PRS
Sbjct: 138 EKPRS 142



 Score =  112 bits (269), Expect = 2e-25
 Identities = 49/64 (76%), Positives = 57/64 (89%)
 Frame = +2

Query: 62  RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 241
           R  QRWADK++KK+H+G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17  RINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75

Query: 242 NGKK 253
           NGKK
Sbjct: 76  NGKK 79


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  120 bits (290), Expect = 5e-28
 Identities = 55/65 (84%), Positives = 61/65 (93%)
 Frame = +1

Query: 247 KERTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 426
           K+  AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 78  KKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137

Query: 427 ERPRS 441
           E+PRS
Sbjct: 138 EKPRS 142



 Score =  103 bits (247), Expect = 8e-23
 Identities = 47/64 (73%), Positives = 54/64 (84%)
 Frame = +2

Query: 62  RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 241
           R  QRWADK +KK++ G +WK  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17  RITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75

Query: 242 NGKK 253
           NGKK
Sbjct: 76  NGKK 79


>At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 289

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 376 VVKVANVSLLALYKEKKERPRS*VYIVISDLLSGSALFI 492
           VV++  +SL   Y  KKE+  +  +++  D+L   A+F+
Sbjct: 80  VVQIVYISLFFFYAPKKEKTLTVKFVLFVDVLGFGAIFV 118


>At4g34138.1 68417.m04844 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 488

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 13  KWVNPEEYERRVTREPPS*TAMGGQRIQESPHGYEMEG*PFRWCISRKGHR-PRESW 180
           KW++ ++ +  +     + ++   +++ E   G +M G  F W ++RKG +  +E W
Sbjct: 280 KWLDSKKCDSVIYMAFGTMSSFKNEQLIEIAAGLDMSGHDFVWVVNRKGSQVEKEDW 336


>At1g32960.1 68414.m04059 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
          Length = 777

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 77  WADKEFKKAHMGTKWKANPFGGASHAKG 160
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 77  WADKEFKKAHMGTKWKANPFGGASHAKG 160
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599


>At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide acetyltransferase
           (E2) subunit of PDC [Arabidopsis thaliana] GI:559395;
           contains Pfam profiles PF00198: 2-oxo acid
           dehydrogenases acyltransferase (catalytic domain),
           PF00364: Biotin-requiring enzyme, PF02817: e3 binding
           domain; supporting cDNA
           gi|5881964|gb|AF066080.1|AF066080
          Length = 637

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 122 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKGPH 262
           K  P   +S +K  V +        PNS IRK +  +L+++ +K PH
Sbjct: 386 KETPSKSSSTSKPSVTQSDNNYEDFPNSQIRKIIAKRLLESKQKIPH 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,743,681
Number of Sequences: 28952
Number of extensions: 274615
Number of successful extensions: 654
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)