Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30428
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    77   1e-15
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    75   8e-15
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   1.6  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   3.8  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   8.7  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   8.7  

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 77.4 bits (182), Expect = 1e-15
 Identities = 38/72 (52%), Positives = 47/72 (65%)
 Frame = +1

Query: 256 YAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 435
           Y GK   YVY++ K        RG  +K+R IWG + RPHGNSG+VRA+F  NLPA+  G
Sbjct: 45  YLGKRVCYVYKSSKAV------RG--SKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFG 96

Query: 436 HRIRVMLYPSRI 471
             +RVMLYPS I
Sbjct: 97  SSLRVMLYPSNI 108



 Score = 33.1 bits (72), Expect = 0.025
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 131 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFML 262
           P  G RLY KA    ++R     H  T+++K+EG   + +A F L
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYL 46


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 74.5 bits (175), Expect = 8e-15
 Identities = 36/72 (50%), Positives = 47/72 (65%)
 Frame = +1

Query: 256 YAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 435
           Y GK   +VY++ K  P+ G      +K+R IWG V+RPHGNSG VRA+F  NLP +  G
Sbjct: 45  YLGKRICFVYKSNK--PVRG------SKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFG 96

Query: 436 HRIRVMLYPSRI 471
             +RVMLYPS +
Sbjct: 97  ASLRVMLYPSNV 108



 Score = 33.9 bits (74), Expect = 0.014
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 131 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFML 262
           P  G RLY KA    ++R     H  T+L+K+EG   + +A F L
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYL 46


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 363 HLAPDSTQLGFFATGTSGNWCPLLSSVHIDAMLAS 259
           ++ P  T LGFF   T  N  P    VH  +M AS
Sbjct: 333 NIIPVETALGFFTDNTPENPLPTSYQVHSHSMKAS 367


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 174 ISVVYATSTRTPLSSRLKEQKTVMMQSLCWQ 266
           ++V YA  T  P S RLK   + ++Q   WQ
Sbjct: 262 MNVSYAFPTFPPYSDRLKRLISTLLQQYPWQ 292


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 294 LSSVHIDAMLASIKTASLRSFAP---STLRRAVFSCWLRRPRLYPVNTAFAYSL 142
           L+S + D+ +  IKT SL+ F P   + +   +  C   +  L  V   +A +L
Sbjct: 55  LTSENYDSFIKEIKTLSLKKFIPEITAAIVEGMMKCKATKDILSSVKIVWALNL 108


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 365 PAHMATLAVSEPSSSLTSLPRLWDTEY 445
           P     L V EP   +TSLPR WD  Y
Sbjct: 308 PTSTKRLTVLEP---ITSLPRKWDPLY 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,383
Number of Sequences: 5004
Number of extensions: 39932
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)