Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30428
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 87 6e-18
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 85 3e-17
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 68 4e-12
12_01_0899 - 8689125-8689383,8689540-8689826 30 1.2
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099... 29 2.2
10_01_0318 + 3493913-3496976,3497064-3497392 29 2.9
09_04_0201 + 15543318-15543488,15543956-15544069 29 2.9
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220... 29 2.9
12_02_1067 - 25792295-25793167 28 3.8
12_01_0819 + 7545656-7546006,7546087-7546162,7547196-7547401,754... 28 3.8
05_05_0112 - 22480639-22480905,22480991-22481287,22481707-224818... 28 3.8
04_01_0053 + 551027-553024 28 3.8
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 27 6.6
11_04_0142 + 14027726-14029081 27 6.6
03_02_0306 + 7290086-7290283,7290998-7291154,7291270-7291377,729... 27 8.8
01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056 27 8.8
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 87.4 bits (207), Expect = 6e-18
Identities = 43/72 (59%), Positives = 50/72 (69%)
Frame = +1
Query: 256 YAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 435
Y GK YVY+AK ++ GG T R IWGKVTRPHGNSG VRAKFKSNLP +MG
Sbjct: 49 YCGKRMAYVYKAKTKS---GG-----TNYRCIWGKVTRPHGNSGVVRAKFKSNLPPASMG 100
Query: 436 HRIRVMLYPSRI 471
++RV +YPS I
Sbjct: 101 RKVRVFMYPSSI 112
Score = 40.7 bits (91), Expect = 7e-04
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 143 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVF 256
RLY + GYKR NQ+ENT+L+++EG + + +
Sbjct: 11 RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAW 48
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 85.0 bits (201), Expect = 3e-17
Identities = 40/72 (55%), Positives = 50/72 (69%)
Frame = +1
Query: 256 YAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 435
YAGK YVY+AK ++ + +R IWGKVTRPHGNSG VRAKF+SNLP +MG
Sbjct: 48 YAGKRIAYVYKAKTKS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMG 99
Query: 436 HRIRVMLYPSRI 471
++RV +YPS I
Sbjct: 100 KKVRVFMYPSSI 111
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +2
Query: 119 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRND 247
K + + RLY + GYKR NQ+ENT+LL++EG + +
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEE 44
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 68.1 bits (159), Expect = 4e-12
Identities = 33/59 (55%), Positives = 40/59 (67%)
Frame = +1
Query: 256 YAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAM 432
YAGK YVY+AK ++ + +R IWGKVTRPHGNSG VRAKF+SNLP +M
Sbjct: 48 YAGKRIAYVYKAKTKS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +2
Query: 119 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRND 247
K + + RLY + GYKR NQ+ENT+LL++EG + +
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEE 44
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 446 RILCPIAWAGRLDLNLART-LPELPCGRVTLPQIARSLVFLPRGPP 312
R+L P + A R + AR LPE PC R+ LP+ + LP PP
Sbjct: 17 RLLLPASGAARGAV--ARLPLPEPPCARLLLPEPPWGMAALPPEPP 60
>07_03_0529 -
19107949-19108152,19108857-19109147,19109817-19109939,
19110019-19110306
Length = 301
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -1
Query: 465 GRIQHHSYSVSHSLGREVRLE 403
GR+ HHS+ VS L R VRLE
Sbjct: 124 GRVLHHSFPVSLFLPRNVRLE 144
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 28.7 bits (61), Expect = 2.9
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = -2
Query: 488 LAEGS*ILEGYSITRILCPIAWAGRLDLNLARTLPELPCGRVTLPQIARSLVFLPRGPPG 309
LA GS +LE LC + +G + LA LPEL ++ ++ + P PP
Sbjct: 172 LAAGSSVLEYLD----LCVNSLSGAIPPELAAALPELTYLDLSSNNLSGPM---PEFPPR 224
Query: 308 IGVLFLALYT 279
G+++L+LY+
Sbjct: 225 CGLVYLSLYS 234
>09_04_0201 + 15543318-15543488,15543956-15544069
Length = 94
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 371 GRVTLPQIARSLVFLPRGPPGIGVLFL 291
GR+ PQ + S V PRG PG+ VL L
Sbjct: 6 GRLPRPQGSSSAVPRPRGLPGVSVLLL 32
>07_01_0308 +
2203597-2203774,2203886-2204066,2204141-2204282,
2204371-2204440,2204546-2204715
Length = 246
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 336 GFFATGTSGNWCPLLSSVHIDAMLA 262
GFFA G+WC LL+ ++I + A
Sbjct: 171 GFFAAAIIGSWCNLLTVIYIGFVCA 195
>12_02_1067 - 25792295-25793167
Length = 290
Score = 28.3 bits (60), Expect = 3.8
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = -1
Query: 381 VAMWAG--HLAPDSTQLGFFATGTS-GNWCPLLSSVHIDAMLASIKTASLRSFAPSTLRR 211
VA W HL + F AT G CP SS+ + + + A++ + P R
Sbjct: 151 VARWRRLEHLELEHRPASFPATAARVGAGCPGFSSLKMAGAIRDVDAAAMAASLPRLKRL 210
Query: 210 AVFSCWLRRPRLYPV 166
+ C+L R L V
Sbjct: 211 CLDGCYLPRHELLAV 225
>12_01_0819 +
7545656-7546006,7546087-7546162,7547196-7547401,
7547498-7547584,7547673-7547765,7548172-7548326,
7548470-7548554,7548632-7548718,7548801-7548920,
7549707-7549808,7549903-7550070
Length = 509
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -1
Query: 300 PLLSSVHIDAMLASIKTASLRSFAPSTLRRAVFSCWLRRPRLYPVNTA 157
P L + H D +L S A+ + ST FS WLR L P A
Sbjct: 43 PRLVACHADTLLPSSSPAAAAAACASTASANGFSDWLREHGLPPGKVA 90
>05_05_0112 -
22480639-22480905,22480991-22481287,22481707-22481836,
22482167-22482492,22482609-22482830,22483372-22483684,
22483795-22483850
Length = 536
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 230 AKDRNDAVFMLASIASMCTELRR-GHQFP 313
A DR +F LAS S T+LRR GH FP
Sbjct: 209 AADRAKTIFTLASPDSKPTDLRRPGHIFP 237
>04_01_0053 + 551027-553024
Length = 665
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = -1
Query: 378 AMWAGHLA-----PDSTQLGFFATGTSGNWCPLLS 289
A++AGHL P+ +GFFA+G+ G LLS
Sbjct: 231 AIFAGHLTMSNRVPNKAYIGFFASGSDGETYGLLS 265
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 323 VAKKPSCVLSGAR*PAHMATLAVSEP--SSSLTSLPRLWDTEYE*C 454
+A +P+CVL G + T + ++ SSS+ RLWDT + C
Sbjct: 1230 LADQPACVLEGHQDDVLDLTWSKTDQLLSSSMDKTVRLWDTTTKAC 1275
>11_04_0142 + 14027726-14029081
Length = 451
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = -1
Query: 327 ATGTSGNWCPLLSSVHIDAMLASIKTASLRSFAPSTLRRAVFSCWLRR 184
AT + + P+L++ + A++A A+ + A ST+ R VF+C + R
Sbjct: 76 ATAPAPSAGPVLTTSNGSAIVAIASAAAAAAAAASTMAREVFACRICR 123
>03_02_0306 +
7290086-7290283,7290998-7291154,7291270-7291377,
7291494-7291621,7291733-7291861,7291945-7292012,
7292130-7292361
Length = 339
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -1
Query: 459 IQHHSYSVSHSLGREVRLELGSDTARVAMWAGHLAPDSTQLGFFATG 319
I H + + H R+ ++ + W G L P+S +L FF G
Sbjct: 248 INGHDHCLEHISSRDSPIQYFTSGGGSKAWRGVLQPNSDKLQFFYDG 294
>01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056
Length = 530
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 252 TASLRSFAPSTLRRAVFSCWLRRPRLYPVNTAFAYSLPWRGFDAL 118
T +L S+ P + R F+ W+R V +++PW G L
Sbjct: 153 TVTLTSYFPES-ERDTFAGWIRAVAAKGVRDLTLHNIPWSGLHVL 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,182,024
Number of Sequences: 37544
Number of extensions: 321832
Number of successful extensions: 888
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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