Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30428
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)             83   2e-16
SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)                   28   3.9  
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)                 27   9.0  

>SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)
          Length = 115

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 40/66 (60%), Positives = 46/66 (69%)
 Frame = +1

Query: 256 YAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 435
           Y GK   +VYRAK +T   G    K TKLR IWGKVTR HGNSG VRAKF+ NLP +AMG
Sbjct: 44  YLGKRLAFVYRAKNKTVAKGDK--KATKLRVIWGKVTRAHGNSGVVRAKFRHNLPPKAMG 101

Query: 436 HRIRVM 453
             +RV+
Sbjct: 102 ATVRVI 107



 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 22/40 (55%), Positives = 29/40 (72%)
 Frame = +2

Query: 143 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFML 262
           RLY K +  G+KRGLRNQH NT+L+K+EG  +R +  F L
Sbjct: 6   RLYTKGIVLGFKRGLRNQHPNTSLVKIEGVDERKNTEFYL 45


>SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 419 GRLDLNLARTLPELPCGRVTLPQI 348
           G  DLN+ +T+P + C R+  P++
Sbjct: 257 GLFDLNIGQTIPSVTCRRIPFPEL 280


>SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)
          Length = 614

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -1

Query: 408 LELGSDTARVAMWAG----HLAPDSTQLGFFATGTSGNWC 301
           L L   TA + +W G    HLA D   +  FATG S  WC
Sbjct: 12  LALRQPTASLNIWEGRAPPHLAVDGVNMSTFATG-STIWC 50


>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
          Length = 506

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 286 RAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGS 390
           R ++R P P  PR       + WG  T   GN+G+
Sbjct: 79  RRRRRRPPPCPPRNCAVSAWSSWGPCTHQCGNAGT 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,729,524
Number of Sequences: 59808
Number of extensions: 340719
Number of successful extensions: 808
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)