Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30428
(510 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a ... 111 1e-24
BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein. 111 1e-24
BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a ... 111 1e-24
BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a ... 111 1e-24
AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting ... 111 1e-24
X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for ... 108 1e-23
AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a ... 73 8e-13
X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a pr... 38 0.015
AK126039-1|BAC86408.1| 214|Homo sapiens protein ( Homo sapiens ... 30 4.1
X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein. 30 5.4
>BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 111 bits (267), Expect = 1e-24
Identities = 52/72 (72%), Positives = 56/72 (77%)
Frame = +1
Query: 256 YAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 435
Y GK C YVY+AK T PGG K K R IWGKVTR HGNSG VRAKF+SNLPA+A+G
Sbjct: 42 YLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIG 98
Query: 436 HRIRVMLYPSRI 471
HRIRVMLYPSRI
Sbjct: 99 HRIRVMLYPSRI 110
Score = 59.7 bits (138), Expect = 6e-09
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2
Query: 140 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFML 262
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ F L
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYL 43
>BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein.
Length = 110
Score = 111 bits (267), Expect = 1e-24
Identities = 52/72 (72%), Positives = 56/72 (77%)
Frame = +1
Query: 256 YAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 435
Y GK C YVY+AK T PGG K K R IWGKVTR HGNSG VRAKF+SNLPA+A+G
Sbjct: 42 YLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIG 98
Query: 436 HRIRVMLYPSRI 471
HRIRVMLYPSRI
Sbjct: 99 HRIRVMLYPSRI 110
Score = 59.7 bits (138), Expect = 6e-09
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2
Query: 140 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFML 262
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ F L
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYL 43
>BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 111 bits (267), Expect = 1e-24
Identities = 52/72 (72%), Positives = 56/72 (77%)
Frame = +1
Query: 256 YAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 435
Y GK C YVY+AK T PGG K K R IWGKVTR HGNSG VRAKF+SNLPA+A+G
Sbjct: 42 YLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIG 98
Query: 436 HRIRVMLYPSRI 471
HRIRVMLYPSRI
Sbjct: 99 HRIRVMLYPSRI 110
Score = 59.7 bits (138), Expect = 6e-09
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2
Query: 140 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFML 262
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ F L
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYL 43
>BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 111 bits (267), Expect = 1e-24
Identities = 52/72 (72%), Positives = 56/72 (77%)
Frame = +1
Query: 256 YAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 435
Y GK C YVY+AK T PGG K K R IWGKVTR HGNSG VRAKF+SNLPA+A+G
Sbjct: 42 YLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIG 98
Query: 436 HRIRVMLYPSRI 471
HRIRVMLYPSRI
Sbjct: 99 HRIRVMLYPSRI 110
Score = 59.7 bits (138), Expect = 6e-09
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2
Query: 140 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFML 262
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ F L
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYL 43
>AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting
protein 33 protein.
Length = 110
Score = 111 bits (267), Expect = 1e-24
Identities = 52/72 (72%), Positives = 56/72 (77%)
Frame = +1
Query: 256 YAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 435
Y GK C YVY+AK T PGG K K R IWGKVTR HGNSG VRAKF+SNLPA+A+G
Sbjct: 42 YLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIG 98
Query: 436 HRIRVMLYPSRI 471
HRIRVMLYPSRI
Sbjct: 99 HRIRVMLYPSRI 110
Score = 59.7 bits (138), Expect = 6e-09
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2
Query: 140 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFML 262
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ F L
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYL 43
>X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for
ribosomal protein L35a. ).
Length = 110
Score = 108 bits (260), Expect = 1e-23
Identities = 51/72 (70%), Positives = 55/72 (76%)
Frame = +1
Query: 256 YAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 435
Y GK C YVY+AK T PGG K K R IWGKVTR HGNSG V AKF+SNLPA+A+G
Sbjct: 42 YLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVLAKFRSNLPAKAIG 98
Query: 436 HRIRVMLYPSRI 471
HRIRVMLYPSRI
Sbjct: 99 HRIRVMLYPSRI 110
Score = 59.7 bits (138), Expect = 6e-09
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2
Query: 140 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFML 262
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ F L
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYL 43
>AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a
pseudogene 3 protein.
Length = 96
Score = 72.5 bits (170), Expect = 8e-13
Identities = 36/58 (62%), Positives = 38/58 (65%)
Frame = +1
Query: 256 YAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQA 429
Y GK C VY+AK T IPG K K R IWGKVTR H NSG V AKF SNLPA+A
Sbjct: 41 YLGKRCACVYKAKSNTMIPGS---KPNKSRVIWGKVTRAHRNSGMVAAKFHSNLPAKA 95
Score = 51.2 bits (117), Expect = 2e-06
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +2
Query: 140 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFML 262
GRL++K+ F GYKR L+NQ E+TALLK+EG +++ F L
Sbjct: 2 GRLWSKSFFAGYKRSLQNQREHTALLKIEGGYAQDETEFYL 42
>X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a
protein.
Length = 21
Score = 38.3 bits (85), Expect = 0.015
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +2
Query: 140 GRLYAKAVFTGYKRGLRNQ 196
GRL++KA+F GYKRGLRNQ
Sbjct: 3 GRLWSKAIFAGYKRGLRNQ 21
>AK126039-1|BAC86408.1| 214|Homo sapiens protein ( Homo sapiens
cDNA FLJ44051 fis, clone TESTI4033433. ).
Length = 214
Score = 30.3 bits (65), Expect = 4.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -3
Query: 391 HCQSCHVGGSPCPR*HAAWFFCHGDLRELVSSS*LCTHRRNACQ 260
HC C GG P P+ H AW + S + HRR+ CQ
Sbjct: 136 HCSHCP-GGQPGPQLHRAWTVWSWAVPSSASRACGDGHRRSTCQ 178
>X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein.
Length = 1618
Score = 29.9 bits (64), Expect = 5.4
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 366 GHLAPDSTQLGFF-ATGTSGNWCPLLSSVH 280
G PDST LGF+ + TS W PL S H
Sbjct: 1291 GETLPDSTPLGFYLRSPTSPRWTPLESRGH 1320
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,441,532
Number of Sequences: 237096
Number of extensions: 1837445
Number of successful extensions: 7710
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7703
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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