Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30427
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    28   0.80 
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    28   0.80 
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8...    27   1.1  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    26   2.4  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    25   4.3  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   4.3  
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    25   4.3  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   5.6  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    25   5.6  

>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 138  YMWNEFFKHIDIEPSNAHVLDGNASDLVVECRR 236
            + +N+  K+ D+   +AHV+   A+DLV   R+
Sbjct: 1015 HRYNDIVKYADLTTQDAHVIKKIAADLVTASRK 1047


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 6   TPLGMYKRLIEFHKEGKLSFKYVTTFNMDE 95
           TP  +Y  LI FH+E +  F+    F++DE
Sbjct: 321 TPAAVYLYLINFHREYRKFFEENAPFSVDE 350


>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
           Cut8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 350 VKTLAYDTLDANKRFFDNDISKVPRQALTVG 442
           ++TL+Y  +   K  FD DISK  RQ L VG
Sbjct: 1   METLSYSQIKKRKADFDEDISKRARQ-LPVG 30


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 81  FNMDEYVGLPRDHPESYHYY--MWNEFFKHIDIEPSN-AHVLDGNASDLVVECRRFEKL- 248
           F +  +VG+    P S HY+    N++F ++D   ++ AH     AS+         ++ 
Sbjct: 201 FEIRSFVGITGGRPRSAHYFYARQNQYFFYLDPHCTHFAHTTTQPASEETFHSATLRRVA 260

Query: 249 IQRLAECI 272
           IQ L  C+
Sbjct: 261 IQDLDPCM 268


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -1

Query: 404 RCQRTACWRPGCRRPGSSLASETPARSPVR*TRCDRPDRYLR*TNALRQPLYEFLEASTL 225
           +C    C RPGC R  SS   + P   P     C+ P   +R  + +  P ++ L A+ L
Sbjct: 72  KCSNEECPRPGCYRSYSSNKEDHP---PCE--ICNSPMNLVRHVSFVDCPGHDILMATML 126

Query: 224 D 222
           +
Sbjct: 127 N 127


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 230 STLRETHTEAGGVHLFIGGIGPDGHIAFNEPGSS 331
           S    THT  GGVH   G   P+ ++  N P SS
Sbjct: 229 SNYNTTHTSGGGVH--SGAATPNAYVN-NNPSSS 259


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 81  FNMDEYVGLPRDHPESY 131
           ++ +  + LPRDHPE Y
Sbjct: 82  YDTERKISLPRDHPEYY 98


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 44  QGREIIFQICDHFQHGRVC 100
           + R+++F +C H  + RVC
Sbjct: 83  KSRKLLFSLCGHMDYVRVC 101


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 301 TVRTDTSDEQMHSASLCMSFSKRRHSTTKSDALPSS 194
           +  T   D+ + SASL  S S R H+  +S  +P +
Sbjct: 396 SAETSKKDDGVQSASLNASMSARSHARQRSIHVPKT 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,623
Number of Sequences: 5004
Number of extensions: 33929
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)