Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30427
(461 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0580 + 20776820-20777247,20777341-20778109,20779280-207794... 31 0.45
02_05_0107 + 25897487-25898059 31 0.45
09_06_0039 - 20423829-20424308,20424664-20424729,20425969-204261... 29 1.8
11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634 28 3.2
08_02_1479 + 27390852-27391059,27392017-27392138,27392227-273923... 28 3.2
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 27 5.6
03_01_0069 + 549787-549791,550033-550303,550405-552201 27 7.3
02_05_0797 - 31805956-31806902,31806992-31807505 27 7.3
11_01_0349 - 2614682-2614721,2614881-2614955,2615346-2615538,261... 27 9.7
10_01_0355 + 3912019-3913046,3914354-3914678 27 9.7
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489... 27 9.7
05_05_0084 - 22262007-22262300,22262435-22262707,22263418-222634... 27 9.7
05_03_0660 + 16724361-16724684,16725085-16725300 27 9.7
03_05_1115 + 30506986-30507396 27 9.7
>12_02_0580 +
20776820-20777247,20777341-20778109,20779280-20779447,
20779877-20780236
Length = 574
Score = 31.1 bits (67), Expect = 0.45
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +2
Query: 236 LRETHTEAGGVHLFIGGIGPDGHIAFNE-PGSSLVSRTRVKTLAYDTLD 379
LR H +A G+ L +G ++ +++ PG++ VS R++TLA+D L+
Sbjct: 297 LRRLHVDAPGLRLL--RVGHCDNLPYSDDPGAARVSAPRLETLAWDGLE 343
>02_05_0107 + 25897487-25898059
Length = 190
Score = 31.1 bits (67), Expect = 0.45
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Frame = +1
Query: 259 WRSAFVHRRYRSGRSH-RVQ--------RTGLLAGVSDASEDPGLRHPGRQQAVL*QRHQ 411
WR A HRR R GR + R+Q R+ LLA S + P P +QQ V+ HQ
Sbjct: 19 WRWALCHRRRRRGRGYLRLQPCPGAAGGRSPLLAAGSVKKQPP----PPQQQIVV---HQ 71
Query: 412 QGAPTGAHRWSRN 450
+G +W R+
Sbjct: 72 RGGEKAVLKWGRS 84
>09_06_0039 -
20423829-20424308,20424664-20424729,20425969-20426104,
20426222-20426415
Length = 291
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 284 GIGPDGHIAFNEPGSSLVSRTR 349
G+GPDGHIA PG LV+ +
Sbjct: 186 GMGPDGHIASLFPGHPLVNENK 207
>11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634
Length = 795
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 220 WSSVDASRNSYRGWRSAFVHRRYRSGRSHRVQRTGLLAG 336
W VD YRGWR + RRY +G + ++ L+G
Sbjct: 11 WLQVDLEAQGYRGWR---IWRRYLTGCTTQISVRHDLSG 46
>08_02_1479 +
27390852-27391059,27392017-27392138,27392227-27392350,
27392641-27392702,27392778-27392859,27393338-27393410,
27397092-27397227,27397337-27397386,27397542-27397590,
27398352-27398831
Length = 461
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 272 LFIGGIGPDGHIAFNEPGSSLVSRTRVKTLAY 367
L + G+GPDGH+A PG +V+ +K ++Y
Sbjct: 352 LMLLGMGPDGHVASLFPGHPVVNE-NLKWVSY 382
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 292 SGRS-HRVQRTGLLAGVSDASEDPGLRH 372
SGRS H V + G+L+G + +ED +RH
Sbjct: 229 SGRSNHNVSQGGVLSGDENHTEDTAVRH 256
>03_01_0069 + 549787-549791,550033-550303,550405-552201
Length = 690
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +1
Query: 235 ASRNSYRGWRSAFVHRRYRSGRSHRVQRTGLL-AGVSDASEDPGLRH 372
A+ R WR+ H+R +G RTGL V D E G H
Sbjct: 598 AAERELRQWRAEHEHQRRLTGEGMASPRTGLAEISVFDGGEGRGNPH 644
>02_05_0797 - 31805956-31806902,31806992-31807505
Length = 486
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 253 RGWRSAFVHRRYRSGRSHRVQRTGLLAGVSD 345
RG+ FV+ Y R R + TG LAG+ D
Sbjct: 33 RGFHVTFVNSEYNHHRLLRSRGTGALAGLDD 63
>11_01_0349 -
2614682-2614721,2614881-2614955,2615346-2615538,
2615654-2616287
Length = 313
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 374 GCRRPGSSLASETPARSP 321
GCRR G + A++TPA P
Sbjct: 140 GCRRRGDAAAAQTPAPPP 157
>10_01_0355 + 3912019-3913046,3914354-3914678
Length = 450
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 250 MSFSKRRHSTTKSDALPSSTCALLGSMSMCLKNSFH 143
+SF + +S A PS+TC+LLG + L S H
Sbjct: 69 LSFYSLSSAALRSVAAPSATCSLLGHTNSHLLFSDH 104
>05_07_0247 +
28643862-28644310,28645151-28645207,28645644-28648950,
28649069-28649144,28649356-28649426,28649524-28649589,
28649677-28649766,28649874-28650050,28650513-28650548
Length = 1442
Score = 26.6 bits (56), Expect = 9.7
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Frame = -2
Query: 355 LHSRPRHQRGARFVERDVTVRTDTSDEQMHSASLCMSFSKRRHST----TKSDALPSSTC 188
L +P H R R E V +DT DE + S K+ A+ + C
Sbjct: 435 LRKKPSHHRSTRSTEIKVPTESDTFDENLSVKKSTKEEMNSEDSLLDKHQKASAVRTDHC 494
Query: 187 ALLGSMSMCLKNSFHM 140
G ++ L+ HM
Sbjct: 495 DDSGKRALSLEKPQHM 510
>05_05_0084 -
22262007-22262300,22262435-22262707,22263418-22263468,
22263944-22264035,22264715-22264724
Length = 239
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 106 RPTYSSMLKVVTYLKDNFPSLWNSINRLY 20
R + L V YLK + P+ W ++ +LY
Sbjct: 57 RAKKGTKLSVENYLKPDIPATWQAMEKLY 85
>05_03_0660 + 16724361-16724684,16725085-16725300
Length = 179
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 310 RDVTVRTDTSDEQMHSASLCMS 245
R V V D S+E MH+ S C+S
Sbjct: 14 RRVVVAVDESEESMHALSWCLS 35
>03_05_1115 + 30506986-30507396
Length = 136
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 407 CRCQRTACWRPGCRRPGSSLASETPA 330
C+ RTA W+ R GSS +S +P+
Sbjct: 89 CQMLRTASWKQRRRASGSSSSSSSPS 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,806,370
Number of Sequences: 37544
Number of extensions: 250907
Number of successful extensions: 790
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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