Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30427
(461 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14153| Best HMM Match : No HMM Matches (HMM E-Value=.) 152 1e-37
SB_16349| Best HMM Match : Glucosamine_iso (HMM E-Value=0.14) 99 2e-21
SB_43932| Best HMM Match : Baculo_44 (HMM E-Value=9.7) 30 0.81
SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 28 3.3
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27) 28 4.3
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_31032| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16) 27 7.6
SB_18554| Best HMM Match : DUF299 (HMM E-Value=4) 27 7.6
SB_38437| Best HMM Match : VWA (HMM E-Value=0) 27 10.0
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 10.0
SB_19893| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.2e-14) 27 10.0
SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
>SB_14153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 293
Score = 152 bits (369), Expect = 1e-37
Identities = 64/84 (76%), Positives = 75/84 (89%)
Frame = +3
Query: 3 GTPLGMYKRLIEFHKEGKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNEFFKHIDIEPS 182
GTPLGMY++LIEF+K G+LSFKYV TFNMDEYVGLP+DHPESYH YMW+ FFKHIDI P
Sbjct: 46 GTPLGMYRKLIEFYKRGELSFKYVKTFNMDEYVGLPKDHPESYHSYMWDNFFKHIDILPE 105
Query: 183 NAHVLDGNASDLVVECRRFEKLIQ 254
NAH+LDGNA+DLV EC +FE+ I+
Sbjct: 106 NAHILDGNAADLVQECNQFEEKIK 129
Score = 115 bits (277), Expect = 2e-26
Identities = 54/68 (79%), Positives = 60/68 (88%)
Frame = +2
Query: 257 AGGVHLFIGGIGPDGHIAFNEPGSSLVSRTRVKTLAYDTLDANKRFFDNDISKVPRQALT 436
AGGV +F+GGIGPDGHIAFNEPGSSL SRTRVK+LA +T+ AN RFFDNDISKVP ALT
Sbjct: 131 AGGVDVFVGGIGPDGHIAFNEPGSSLASRTRVKSLAKETIVANARFFDNDISKVPTMALT 190
Query: 437 VGVGTVID 460
VGV TV+D
Sbjct: 191 VGVQTVMD 198
>SB_16349| Best HMM Match : Glucosamine_iso (HMM E-Value=0.14)
Length = 62
Score = 99.1 bits (236), Expect = 2e-21
Identities = 47/58 (81%), Positives = 51/58 (87%)
Frame = +2
Query: 287 IGPDGHIAFNEPGSSLVSRTRVKTLAYDTLDANKRFFDNDISKVPRQALTVGVGTVID 460
IGPDGHIAFNEPGSSL SRTRVK+LA +T+ AN RFFDNDISKVP ALTVGV TV+D
Sbjct: 2 IGPDGHIAFNEPGSSLASRTRVKSLAKETIVANARFFDNDISKVPTMALTVGVQTVMD 59
>SB_43932| Best HMM Match : Baculo_44 (HMM E-Value=9.7)
Length = 240
Score = 30.3 bits (65), Expect = 0.81
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +1
Query: 259 WRSAFVHRRYRSGRSHRVQRTGLLAGVSDASEDPGLRHPGRQQAVL*QRHQQGAPTGAHR 438
WR V +Y R +R++ GL+ GL P + L QR ++ TG +
Sbjct: 7 WRFLIVKLKYEENRRYRIKMRGLIIVFLVVELLGGLGEPCKLTPKLQQRQRKSTITGLYG 66
Query: 439 WSRN 450
SR+
Sbjct: 67 MSRS 70
>SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 1291
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 2 WDAPRHVQTVDRVPQGREIIFQICDHFQHGRVC 100
W AP VQ R G + +CDH RVC
Sbjct: 669 WKAPLDVQIKARCVVGDDYPEPVCDHLLQRRVC 701
>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
Length = 1068
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 344 TRVKTLAYDTLDANKRFFDNDISKV 418
TRVK ++ L +K+F D DISK+
Sbjct: 698 TRVKQRLHEILSQDKKFTDEDISKL 722
>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 3 GTPLGMYKRLIEFHKEGKLSFKYVTTFNMDE 95
GT +K + E H++GK+ V+ FN+DE
Sbjct: 449 GTWKESWKAMEELHRQGKIRSLGVSNFNVDE 479
>SB_31032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 260 GGVHLFIGGIGPDGHIAFNEPGSSLVSRTRVKTLAYDTLDANKRF 394
G + + + G H A N G +LVSR ++ T A +TL R+
Sbjct: 64 GSLRVGLSVFGHANHTAVNNVGRNLVSRLKM-TFAGETLQDTNRY 107
>SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16)
Length = 339
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 322 RFVERDVTVRTDTSDEQMHSASLCMSFSKRRHSTTKSDALP 200
R +R VRT +++Q+H+ C + + R + K LP
Sbjct: 180 RKTDRPTRVRTVLNEKQLHTLRTCYNANPRPDAMMKEQLLP 220
>SB_18554| Best HMM Match : DUF299 (HMM E-Value=4)
Length = 288
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 295 RTDTSDEQMHSASLCMSFSKRRHSTTKSDAL 203
+TD + +H S M+ +K+R+S T+ DAL
Sbjct: 29 QTDKEMQPVHFISRTMTDTKKRYSQTEKDAL 59
>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
Length = 3445
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 296 DGHIAFNEPGSSLVSRTRVKTLAYDTLDANKRFFDNDISKVPRQALTVG 442
DG+ A+N G+S RT + +L D + KRF + + ++ +G
Sbjct: 2162 DGYKAWNYVGASYDDRTGIASLFVDGVVVAKRFIGRRLRLNTKHSIRLG 2210
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 250 MSFSK-RRHSTTKSDALPSSTCALLGSM 170
+SFS+ ++H +T + PS TC L G M
Sbjct: 3106 VSFSEMKKHMSTVHNCRPSKTCELCGKM 3133
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 250 MSFSK-RRHSTTKSDALPSSTCALLGSM 170
+SFS+ ++H +T + PS TC L G M
Sbjct: 3316 VSFSEMKKHMSTVHNCRPSKTCELCGKM 3343
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 250 MSFSK-RRHSTTKSDALPSSTCALLGSM 170
+SFS+ ++H +T + PS TC L G M
Sbjct: 4237 VSFSEMKKHMSTVHNCRPSKTCELCGKM 4264
>SB_19893| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.2e-14)
Length = 443
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 141 MWNEFFKHIDIEPSNAHVLDGNASDLVVEC 230
+WNE ++ I+ S ++ D+VVEC
Sbjct: 397 LWNEKYREQKIDQSKVLLVIDQVEDIVVEC 426
>SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 129 YHYYMWNEFFKHIDIEPSNAHVLDGNASDLVVECRRFEKL 248
+H + H+ +E N +LD +LV CRR ++L
Sbjct: 269 FHISKYCPNIDHLSLE-HNIKILDDGVKELVSRCRRLKRL 307
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,617,171
Number of Sequences: 59808
Number of extensions: 282231
Number of successful extensions: 816
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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