Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30427
         (461 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-3|CAB03280.1|  267|Caenorhabditis elegans Hypothetical pr...   122   9e-29
AC025716-9|AAK39619.1|  469|Caenorhabditis elegans Hypothetical ...    31   0.53 
Z67879-4|CAB54185.1|  297|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    29   2.1  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    29   2.1  
U23515-4|AAU87816.1|  333|Caenorhabditis elegans Hypothetical pr...    27   4.9  

>Z81113-3|CAB03280.1|  267|Caenorhabditis elegans Hypothetical
           protein T03F6.3 protein.
          Length = 267

 Score =  122 bits (295), Expect = 9e-29
 Identities = 52/83 (62%), Positives = 65/83 (78%)
 Frame = +3

Query: 6   TPLGMYKRLIEFHKEGKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNEFFKHIDIEPSN 185
           TPLGMYK+LIEF+  G +SF+ V TFNMDEYV LPRDH ESYH +M++ FF+HIDI P+N
Sbjct: 43  TPLGMYKKLIEFYNAGVISFEKVKTFNMDEYVDLPRDHTESYHSFMFDNFFRHIDINPAN 102

Query: 186 AHVLDGNASDLVVECRRFEKLIQ 254
            H+LDGN SD   EC  +E+ I+
Sbjct: 103 IHILDGNTSDHEKECEEYERKIK 125



 Score =  114 bits (274), Expect = 3e-26
 Identities = 52/69 (75%), Positives = 59/69 (85%)
 Frame = +2

Query: 254 EAGGVHLFIGGIGPDGHIAFNEPGSSLVSRTRVKTLAYDTLDANKRFFDNDISKVPRQAL 433
           E+GG+ LF+GGIGPDGHIAFNEPGSSL SRTR+KTL  DT+ AN RFF  DI+KVP QAL
Sbjct: 126 ESGGIDLFVGGIGPDGHIAFNEPGSSLASRTRIKTLNEDTIQANARFFGGDITKVPTQAL 185

Query: 434 TVGVGTVID 460
           TVGV TV+D
Sbjct: 186 TVGVQTVMD 194


>AC025716-9|AAK39619.1|  469|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.8 protein.
          Length = 469

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = -1

Query: 404 RCQRTACWRPGCRRPGSSLASETPARSPVR*TRCDRPDRYLR*TNALRQPLYEFLEASTL 225
           RC    C RPGC R   S  S TP R P     C      +R  + +  P ++ L A+ L
Sbjct: 89  RCSNQECPRPGCYR---SAGSSTPDRFPCERAGCGGEFTCVRHVSFVDCPGHDILMATML 145

Query: 224 D 222
           +
Sbjct: 146 N 146


>Z67879-4|CAB54185.1|  297|Caenorhabditis elegans Hypothetical
           protein C05E7.1 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -2

Query: 334 QRGARFVERDVTVRTDTSDEQMHSASLCMSFSKRRHSTTKSDALPSSTCALLGSMSMC 161
           Q+G   +   V +  D SDE +   S+  +   +R      DA P + C  +GS   C
Sbjct: 84  QKGCYAISGKVKIHEDVSDELLIYLSVSTTGDTQRPPEVCRDANPDTGCGGVGSCLYC 141


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -2

Query: 340  RHQRGARFVERDVTVRTDTSDEQMHSASLCMSFSKRRHSTTKSDALPSSTCALLGSMSM 164
            +H R A   E  +       D +  S +LC+   +   S   S+   +S C + GS+SM
Sbjct: 2019 KHMRTAHAAE--LPFEASCCDARFASKALCVKHDQEHASFLDSNGTDASCCPICGSLSM 2075


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -2

Query: 340  RHQRGARFVERDVTVRTDTSDEQMHSASLCMSFSKRRHSTTKSDALPSSTCALLGSMSM 164
            +H R A   E  +       D +  S +LC+   +   S   S+   +S C + GS+SM
Sbjct: 2019 KHMRTAHAAE--LPFEASCCDARFASKALCVKHDQEHASFLDSNGTDASCCPICGSLSM 2075


>U23515-4|AAU87816.1|  333|Caenorhabditis elegans Hypothetical
           protein R144.12 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 109 GRPTYSSMLKVVTYLKDNFPSLWNSINRLYMPRGV 5
           G+  Y  MLK    ++D  PSLWN I      RG+
Sbjct: 270 GKEYYWKMLKRNRIMRDIKPSLWNQITATGDIRGI 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,401,570
Number of Sequences: 27780
Number of extensions: 206127
Number of successful extensions: 623
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)