Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30427
(461 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g13380.1 68418.m01541 auxin-responsive GH3 family protein sim... 29 1.5
At5g13370.1 68418.m01540 auxin-responsive GH3 family protein sim... 29 1.5
At5g24400.1 68418.m02876 glucosamine/galactosamine-6-phosphate i... 28 2.7
At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4... 28 2.7
At4g14950.3 68417.m02297 expressed protein 28 3.5
At4g14950.2 68417.m02295 expressed protein 28 3.5
At4g14950.1 68417.m02296 expressed protein 28 3.5
At5g13360.1 68418.m01539 auxin-responsive GH3 family protein sim... 27 6.2
At2g17140.1 68415.m01979 pentatricopeptide (PPR) repeat-containi... 27 6.2
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to... 27 6.2
>At5g13380.1 68418.m01541 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 624
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -2
Query: 109 GRPTYSSMLKVVTYLKDNFPSLWNSI 32
G P SS LKV+ +L+D++P L ++I
Sbjct: 246 GAPYASSFLKVIKFLEDHWPELCSNI 271
>At5g13370.1 68418.m01540 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 595
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -2
Query: 109 GRPTYSSMLKVVTYLKDNFPSLWNSI 32
G P SS LKV+ +L+D++P L ++I
Sbjct: 216 GAPFASSFLKVIKFLEDHWPELCSNI 241
>At5g24400.1 68418.m02876 glucosamine/galactosamine-6-phosphate
isomerase family protein low similarity to SP|O95336
6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) {Homo
sapiens}; contains Pfam profile PF01182:
Glucosamine-6-phosphate
isomerase/6-phosphogluconolactonase
Length = 325
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 272 LFIGGIGPDGHIAFNEPGSSLVSRTR 349
L + G+GPDGH+A PG L + ++
Sbjct: 223 LMLLGMGPDGHVASLFPGHGLCNESK 248
>At1g54560.1 68414.m06222 myosin, putative similar to myosin
GI:433663 from [Arabidopsis thaliana]
Length = 1529
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = +3
Query: 117 HPESYHYYMWNEFFKHIDIEPSNAHVLDGNASDLVVECRRFEKLIQRLAECI 272
HP+++HY ++ F+ + I ++ ++ A D+V + ++ I R+ I
Sbjct: 278 HPKTFHYLNQSKCFELVGISDAHDYIATRRAMDIVGMSEKEQEAIFRVVAAI 329
>At4g14950.3 68417.m02297 expressed protein
Length = 406
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 263 GVHLFIGGIGPDGHIAFNEPGSSLVSRTRVKTLAYDTLDANK 388
G+H F+ +GP HIA ++L R +K+ YDT+ +
Sbjct: 106 GLHTFVLYLGP--HIALFTLKATLCGRVDLKSAPYDTIQLKR 145
>At4g14950.2 68417.m02295 expressed protein
Length = 355
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 263 GVHLFIGGIGPDGHIAFNEPGSSLVSRTRVKTLAYDTLDANK 388
G+H F+ +GP HIA ++L R +K+ YDT+ +
Sbjct: 106 GLHTFVLYLGP--HIALFTLKATLCGRVDLKSAPYDTIQLKR 145
>At4g14950.1 68417.m02296 expressed protein
Length = 416
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 263 GVHLFIGGIGPDGHIAFNEPGSSLVSRTRVKTLAYDTLDANK 388
G+H F+ +GP HIA ++L R +K+ YDT+ +
Sbjct: 116 GLHTFVLYLGP--HIALFTLKATLCGRVDLKSAPYDTIQLKR 155
>At5g13360.1 68418.m01539 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 594
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 109 GRPTYSSMLKVVTYLKDNFPSLWNSI 32
G P SS LK++ +L+D++P ++I
Sbjct: 216 GAPFASSFLKIIKFLEDHWPEFCSNI 241
>At2g17140.1 68415.m01979 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 903
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 27 RLIEFHKEGKL--SFKYVTTFNMDEYVGLPRDHPESYH 134
R+ KEGK+ + + + +DEY+GLPR + +Y+
Sbjct: 258 RISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYN 295
>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
thaliana]; similar to ESTs gb|R30087 and gb|AA394762
Length = 1538
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = +3
Query: 117 HPESYHYYMWNEFFKHIDIEPSNAHVLDGNASDLVVECRRFEKLIQRLAECI 272
HP+++HY ++ F+ + I ++ ++ A D+V + ++ I R+ I
Sbjct: 283 HPKTFHYLNQSKCFELVGISDAHDYLATRRAMDIVGISEKEQEAIFRVVAAI 334
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,773,447
Number of Sequences: 28952
Number of extensions: 187414
Number of successful extensions: 639
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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