Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30423
(452 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 28 0.58
SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo... 27 1.0
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 27 1.0
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 26 3.1
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 4.1
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 25 4.1
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 5.4
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 25 7.2
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 24 9.5
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p... 24 9.5
SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces pomb... 24 9.5
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 28.3 bits (60), Expect = 0.58
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 107 YSAKESSVVDFCESKTESLSNWVRQVKNKSLTAKTKRKRDLRVIAILSHF 256
++A S VDF T+SLS N S+T + + + + SHF
Sbjct: 524 FAASRPSSVDFMSQSTDSLSKNDTTASNGSMTPSSSQNNSVIIDIPRSHF 573
>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 283
Score = 27.5 bits (58), Expect = 1.0
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +2
Query: 17 ELNQCHFVPGRIQVCNTVLPQFIEPF 94
EL++C F+P ++++C++ +EPF
Sbjct: 232 ELSRCRFIPDQLEICDSTT---LEPF 254
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 27.5 bits (58), Expect = 1.0
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 208 DKEKARFESNRHLESLLVRAETELVMKQRERARKWAQMQVDLGLSNKEEEIARRHREKID 387
+K +E N E + E E+ +++ QMQ+ L E+ ARR R ID
Sbjct: 117 EKRLQEYEENELAERNDIPEEDEMEKLEQKTLDTKRQMQISDALDELREKSARRSRVNID 176
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 41 PGRIQVCNTVLPQFIEPFLIMGYSAKESSVVDFCE 145
P RI++ NT++ F+ + G S S+ + CE
Sbjct: 34 PIRIRIINTIIISFMTMLCMYGSSVFMPSIPELCE 68
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 403 HSPTNNRFFPGDAWRFPPLCWTIRGQLASEPTS 305
HSP N RF P A+ P L ++PTS
Sbjct: 209 HSPGNRRFNPYKAYPQPHLGHRFSRNAGNDPTS 241
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 4.1
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 33 ILC-QVGYRCVILYYHNLLSPF**WATVPKNLQLLTFVKVKQNLYRTGFDKLKISLS 200
I+C Q RC+ YYHNL + VP L T +K+ Y T +++ + +S
Sbjct: 347 IICHQAILRCIYGYYHNLSLEELPFINVP----LHTIIKLTPMTYETIEERVTVPIS 399
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 5.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 91 LSNNGLQCQRIFSC 132
L++NGL QR+FSC
Sbjct: 14 LNHNGLSYQRVFSC 27
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 24.6 bits (51), Expect = 7.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 116 KESSVVDFCESKTESLSNWVR 178
K ++ V C SKTES+++ VR
Sbjct: 183 KANATVTLCHSKTESIADIVR 203
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 24.2 bits (50), Expect = 9.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = +2
Query: 8 VAPELNQCHFVPGRIQVCNTV 70
+ ++ CHFVP R C +
Sbjct: 24 ICTQIFSCHFVPRRCSTCKRI 44
>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 161
Score = 24.2 bits (50), Expect = 9.5
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 202 SQDKEKARFESNRHLESLLVRAETELVMKQRER 300
+++K+ ++FE + L+R + EL+ + RER
Sbjct: 100 NREKKSSKFEQSGVSRDELLRQQEELLSRARER 132
>SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 24.2 bits (50), Expect = 9.5
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 193 VSHSQDKEKARFESNRHLESLLVRA-ETELVMKQRERARKWAQMQVDLGLSNKEEEIARR 369
V ++K+ E N ++R+ +T+ M E + + +Q L + E +
Sbjct: 32 VQEHSSRDKSPLEENGVSTYQMLRSKDTDSAMPMTEAQKHFESVQEQRLLQKAKNERLKT 91
Query: 370 HREKID 387
H+++ID
Sbjct: 92 HKDRID 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,874,877
Number of Sequences: 5004
Number of extensions: 37165
Number of successful extensions: 107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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