Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30423
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0068 - 16177937-16178746                                         29   2.3  
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183...    28   3.1  
01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912           28   3.1  
11_04_0333 + 16474011-16475478,16475622-16475641                       27   5.3  
02_05_0780 - 31705605-31705754,31705858-31706191,31706306-317064...    27   5.3  
08_02_0064 - 11848060-11848476,11848518-11849090                       27   9.3  
06_01_1178 + 10131844-10131993,10132103-10132171,10132446-101324...    27   9.3  
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    27   9.3  

>06_03_0068 - 16177937-16178746
          Length = 269

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 198 RDLFLTCRTQFDRDSVLLSQKSTTE 124
           +D F+TC +Q DRD++L   +  T+
Sbjct: 73  KDFFITCASQSDRDAILRQPRLATK 97


>12_02_1280 -
           27517683-27517871,27517955-27518029,27518155-27518318,
           27518424-27518538,27518783-27519074,27519162-27519318,
           27519438-27519510,27520309-27520377,27520471-27520694,
           27520800-27520981,27521067-27522064,27522335-27522580
          Length = 927

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = +1

Query: 193 VSHSQDKEKARFESNRHLESLLVRAETELVMKQRERARKWAQMQVDLGLSNKEEEIARRH 372
           +   +D EK + E+ R  E+++ +   + + KQ        Q++  L  SN EEE+    
Sbjct: 432 MQEEEDPEKIKEEARRRKEAIMAKYRQQQLQKQ--------QLE-SLPRSNDEEEVEMNR 482

Query: 373 REKIDYLWENDLR 411
            +  D   +ND R
Sbjct: 483 GDNADLKGDNDSR 495


>01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912
          Length = 487

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +2

Query: 86  EPFLIMGYSAKESSVVDFCESKTESLSNWVRQVKNKSLTAKTKRKRDLRVIAILSHF 256
           EP+L+   +A  S+  D C +  E+ +  V   K++ L   +   R   + ++LSH+
Sbjct: 32  EPWLVA--AAVASTCDDSCVNDVENFARTVAAAKSRQLVGSSAASRPDMLASVLSHY 86


>11_04_0333 + 16474011-16475478,16475622-16475641
          Length = 495

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 208 DKEKARFESNRHLESLLVRAETELVMKQRERARKWAQMQ-VDLGLS 342
           D+ K  ++ N  L +L+V  E    M QR+ A +W   + V+ G+S
Sbjct: 402 DRIKKAYDRNPELANLIVDREFAREMVQRQNAWRWVVARAVEAGIS 447


>02_05_0780 -
           31705605-31705754,31705858-31706191,31706306-31706478,
           31706615-31706810,31707864-31708777
          Length = 588

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = +1

Query: 208 DKEKARFESNRHLESLLVRAETELVMKQRERARKWAQMQVDLGLSNKEEEIARRHREKID 387
           D+    F +  H   L++RA+ ++   + E A   AQ    L  SN+  EIA  HR +  
Sbjct: 401 DESTKFFGTVAHAYVLMIRAQVDMAAGRFEDAVATAQTACQLDPSNR--EIANVHR-RAK 457

Query: 388 YLWENDLRGLDSF 426
            +    LRG D F
Sbjct: 458 VVASARLRGNDLF 470


>08_02_0064 - 11848060-11848476,11848518-11849090
          Length = 329

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 195 DLFLTCRTQFDRDSVLLSQKSTT 127
           D F+TC  Q DRD++L   +  T
Sbjct: 74  DFFVTCSNQSDRDAILRQPRLAT 96


>06_01_1178 +
           10131844-10131993,10132103-10132171,10132446-10132451,
           10132571-10132930,10133983-10134201,10134905-10135054
          Length = 317

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 293 ENVPGSGLRC-KLTSDCPTKRRKSPGVTGKKS 385
           + + GS L+  K       K+R+ PG TGKKS
Sbjct: 72  KKIEGSDLKSVKSPQSVSVKKRRDPGETGKKS 103


>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 317 RCKLTSDCPTKRRKSPGVTGKKSIICGR 400
           RC  +S  PT R    GV GK++++  R
Sbjct: 169 RCNASSIQPTTRSSPSGVIGKQAMVANR 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,022,644
Number of Sequences: 37544
Number of extensions: 235321
Number of successful extensions: 689
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)