Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30423
(452 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 31 0.45
SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4) 31 0.59
SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08) 29 1.4
SB_8682| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 29 2.4
SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09) 29 2.4
SB_54892| Best HMM Match : DHH (HMM E-Value=0.057) 28 3.1
SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19) 28 4.2
SB_53807| Best HMM Match : MCM (HMM E-Value=0) 28 4.2
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 28 4.2
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_34355| Best HMM Match : DUF827 (HMM E-Value=0.011) 27 5.5
SB_55318| Best HMM Match : zf-DHHC (HMM E-Value=2.5e-12) 27 7.3
SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05) 27 7.3
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002) 27 7.3
SB_39125| Best HMM Match : DUF164 (HMM E-Value=0.082) 27 7.3
SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 27 9.6
SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 9.6
SB_8303| Best HMM Match : START (HMM E-Value=0.0093) 27 9.6
SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12) 27 9.6
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 31.1 bits (67), Expect = 0.45
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 211 KEKARFESNRHLESLLVRAETELVMKQRERARKWAQMQVD-LGLSNKEEEIARRHREKID 387
KEK R E+ + E + + E K++ER K + + D L K+EE R+ E+I+
Sbjct: 339 KEKERLEAKQKKEQERLEKQAEKEKKEKERLEKKQREEKDRLEKKEKKEEEKRKKEEEIN 398
>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
Length = 311
Score = 30.7 bits (66), Expect = 0.59
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 202 SQDKEKARFESNR-HLESLLVRAETELVMKQRERA-RKWAQMQVDLGLSNKEEEIARRHR 375
++++E+ E R + E+ V ETE V K+RER +K ++ + NKE+E + R
Sbjct: 198 NKERERVNKERKRANKETERVNKETERVNKERERVNKKKERLNKEKEQLNKEKEQLNKER 257
Query: 376 EKID 387
++++
Sbjct: 258 KRLN 261
Score = 30.3 bits (65), Expect = 0.78
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +1
Query: 202 SQDKEKARFESNR-HLESLLVRAETELVMKQRERARK-WAQMQVDLGLSNKEEEIARRHR 375
++++++A ++ R + E+ V ETE V K+RER K + + NKE E + R
Sbjct: 170 NKERKRANKDTERVNKETERVNKETERVNKERERVNKERKRANKETERVNKETERVNKER 229
Query: 376 EKID 387
E+++
Sbjct: 230 ERVN 233
>SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 638
Score = 30.7 bits (66), Expect = 0.59
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 202 SQDKEKARFESNR-HLESLLVRAETELVMKQRERA-RKWAQMQVDLGLSNKEEEIARRHR 375
++++E+ E R + E+ V ETE V K+RER +K ++ + NKE+E + R
Sbjct: 457 NKERERVNKERKRANKETERVNKETERVNKERERVNKKKERLNKEKEQLNKEKEQLNKER 516
Query: 376 EKID 387
++++
Sbjct: 517 KRLN 520
Score = 30.3 bits (65), Expect = 0.78
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +1
Query: 202 SQDKEKARFESNR-HLESLLVRAETELVMKQRERARK-WAQMQVDLGLSNKEEEIARRHR 375
++++++A ++ R + E+ V ETE V K+RER K + + NKE E + R
Sbjct: 429 NKERKRANKDTERVNKETERVNKETERVNKERERVNKERKRANKETERVNKETERVNKER 488
Query: 376 EKID 387
E+++
Sbjct: 489 ERVN 492
>SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08)
Length = 1158
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 119 ESSVVDFCESKTESLSNWVRQVKNKSLT 202
E+ DFC+SK + LS+WV +++ + T
Sbjct: 586 EAVFADFCDSKGDRLSDWVEVLRSPAKT 613
>SB_8682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1162
Score = 29.1 bits (62), Expect = 1.8
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +2
Query: 17 ELNQCHFVPGRI-QVCNTVLPQFIEPFLIMGYSAKESSVVDFCESKTESLSNWVRQVKNK 193
ELN FV + +V + + ++ +++ + S V+ CE + +S+ + + + K
Sbjct: 1048 ELNFTRFVKTNLSRVMKELSEERLKKYIVKKWYT--SMVMRICEWLSHRMSDSLHEYQLK 1105
Query: 194 SLTAKTKRKRDLR 232
+L TKR+RD+R
Sbjct: 1106 TLLPITKRRRDMR 1118
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 196 SHSQDKEKARFESNRHLESLLVRAETELVMKQRERARKWAQMQVDLGLSNKEEEIARRHR 375
+ S++K K + E R E +R E ++K+RE + A+ Q + EEE A+R +
Sbjct: 1083 AQSREKRKEQ-EKKRKEEEKRIRDEELRLLKEREEEQALARAQAEAKQQAIEEEKAKRLQ 1141
Query: 376 EK 381
++
Sbjct: 1142 DE 1143
>SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09)
Length = 265
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 340 SNKEEEIARRHREKIDYLWEND 405
SNK E R+ RE+ D LWE+D
Sbjct: 45 SNKSAEKERKEREEEDKLWEDD 66
>SB_54892| Best HMM Match : DHH (HMM E-Value=0.057)
Length = 384
Score = 28.3 bits (60), Expect = 3.1
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +1
Query: 205 QDKEKARFESNRHLESLLVRAETELVMKQRERARKWAQMQVDLGLSNKEEEIARRHREKI 384
QDK K E H + + TE + KQR+ + A L NK+ + E+
Sbjct: 155 QDKVKFNLEELYHSVNEATKRNTEAIQKQRQTRQSPASPGTICRLYNKKLDF-----EQF 209
Query: 385 DYLWENDLRGL 417
DY + ++GL
Sbjct: 210 DYGFSETIKGL 220
>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1421
Score = 28.3 bits (60), Expect = 3.1
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = +1
Query: 166 ELGSTS*K*VSHSQDKEKARFESNRHLESLLVRAETELV-MKQRERARKW--AQMQVDLG 336
+L ST K + QD+ K E ES VR+E ++ +K+ +R+RK + + L
Sbjct: 375 KLRSTCRKCRNRDQDRYKTE-EMGHWAESPEVRSEKIILELKRDKRSRKTLVTKSKHQLK 433
Query: 337 LSNKEEEIARRH-REKIDYLWE 399
S EE+ + +E+ID+ WE
Sbjct: 434 RSINEEDFDKEKVQEEIDHFWE 455
>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
Length = 648
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 196 SHSQDKEKARFESNRHLESLLVRAETELVMKQRERARK 309
+ +QD K + + N H++ +V+A E++ ++ ER K
Sbjct: 306 AETQDGLKDQIKKNHHVKKWIVKAPVEILQEEGERILK 343
>SB_53807| Best HMM Match : MCM (HMM E-Value=0)
Length = 789
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +1
Query: 262 RAETELVMKQRERARKWAQMQVDLGL----SNKEEEIARRHREKI 384
RAE E +M++R+R +Q ++ G+ + EEE RHR +I
Sbjct: 30 RAEAERLMRKRDREEAASQGRLRRGILYDDDDDEEESRPRHRRRI 74
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 196 SHSQDKEKARFESNRHLESLLVRAET-ELVMKQRERARKWAQMQVDL 333
S S + RFE+N+ LE R ET LVM +ER+R+ + +D+
Sbjct: 3960 SSSVTSIRRRFENNQ-LEETYKRTETTSLVMDVQERSRESTTLAIDV 4005
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 229 ESNRHLESLLVRAETELVMKQRERARKWAQMQVDLGLSNKEEEIARRHREK 381
E +E L + E E ++R+R + +++++ L KE+E+ R RE+
Sbjct: 1504 EERLRVEEALKKLEREKE-EERQRLEREKELEIERQLKIKEKEVIRLQRER 1553
>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2982
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 293 ENVP--GSGLRCKLTSDCPTKRRKSPGVTGKKS 385
E+VP G L C +T+D RKS G T KK+
Sbjct: 1770 ESVPVCGWALECNVTTDVECFLRKSQGTTEKKT 1802
>SB_34355| Best HMM Match : DUF827 (HMM E-Value=0.011)
Length = 501
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 196 SHSQDKEKARFESNRHLESLLVRAETELVMKQRERARKWAQMQVDLGLSNKEEEI 360
+H + R+ RH + L R ET +V K R+ + Q +V+ L + E+E+
Sbjct: 153 AHEALRLARRWRLMRHASANLKRDETYIVGKNLNRSHRRRQGKVEQRLKSLEQEL 207
>SB_55318| Best HMM Match : zf-DHHC (HMM E-Value=2.5e-12)
Length = 341
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -3
Query: 357 FLLFVGQSEVNLHLSPLPGTFSLFHNELSLCSH*K*LKMAITLKSRFLFVLAV 199
FLLF Q+ + L + + +F S+C LK++IT K + F+L +
Sbjct: 262 FLLFTFQTLLLLADMSIVDFYEVFGRSSSVCDFFSSLKLSITKKKKSRFLLLI 314
>SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)
Length = 1312
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 208 DKEKARFESNR-HLESLLVRAETELVMKQRERARKWA---QMQVDLGLSNKEEEIARRHR 375
D EK RFE R H + L+R++ +L + + RK A +M+ + +++I+
Sbjct: 831 DAEKHRFEQERHHFQETLMRSQEDLRIVLEKEYRKMATSEKMKFEKTFKELKQQISSLQE 890
Query: 376 EKID 387
++++
Sbjct: 891 QRME 894
>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
Length = 458
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 409 GDHSPTNNRFFPGDAWRFPPLC 344
GDH P N PG RF P C
Sbjct: 239 GDHIPPNKLLKPGKTQRFYPQC 260
>SB_39125| Best HMM Match : DUF164 (HMM E-Value=0.082)
Length = 363
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 208 DKEKARFESNR-HLESLLVRAETELVMKQRERARKWA---QMQVDLGLSNKEEEIARRHR 375
D EK RFE R H + L+R++ +L + + RK A +M+ + +++I+
Sbjct: 111 DAEKHRFEQERHHFQETLMRSQEDLRIVLEKEYRKMATSEKMKFEKTFKELKQQISSLQE 170
Query: 376 EKID 387
++++
Sbjct: 171 QRME 174
>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 999
Score = 26.6 bits (56), Expect = 9.6
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 196 SHSQDKEKARFESNRHLESLLVRAETELVMKQRERARKWAQMQVDLGLSNKEEEIARRHR 375
S +Q KE+ E L++ + E E +++R + + A+ + S K+EE+ HR
Sbjct: 802 SWNQQKEETLKEKQERLKAKK-KEEEEKELEKRSKTKD-AKKYFESWKSKKDEELKEAHR 859
Query: 376 EKIDYL 393
K+ L
Sbjct: 860 AKMQEL 865
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 193 VSHSQDKEKARFESNRHLE-SLLVRAETELVMKQRERARKWAQMQVDLGLSNKEEEIARR 369
+ ++ E+ RFE + + L A V +Q++ + Q Q + L + EE+ +
Sbjct: 1152 LDQEKEVERVRFEEEKQRDIERLTAAMDGSVSEQQQLQLRMLQEQHERELESVREELVQT 1211
Query: 370 HREK 381
H EK
Sbjct: 1212 HMEK 1215
>SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 757
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 193 VSHSQDKEKARFESNRHLESLLVRAETELVMKQRERA 303
+S SQD R + + LE+ +R EL ++ ERA
Sbjct: 233 ISKSQDGTGCRVKVEKDLENNTIREHGELTARKEERA 269
>SB_8303| Best HMM Match : START (HMM E-Value=0.0093)
Length = 522
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 149 KTESLSNWVRQVKNKSLTAKTKRKRD 226
++E NW R++KNK K+K D
Sbjct: 288 ESELPDNWTRKMKNKEAEVSKKKKTD 313
>SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)
Length = 1328
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 325 VDLGLSNKEEEIARRHREKIDYLWENDLRGLDSF 426
VDLG+ N+ + RRHR D RGL++F
Sbjct: 297 VDLGVCNEIRTVLRRHRNHADI----QKRGLEAF 326
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,057,577
Number of Sequences: 59808
Number of extensions: 275411
Number of successful extensions: 803
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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