Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30423
         (452 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   3.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   6.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   6.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 373 GDAWRFPPLCW 341
           G+ WRFP LC+
Sbjct: 40  GNLWRFPYLCY 50



 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 400 SPTNNRFFPGDAWRFPPLCWT 338
           +P N R+      R   LCWT
Sbjct: 141 NPWNTRYCLTPTERLEALCWT 161


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 373 GDAWRFPPLCW 341
           G+ WRFP LC+
Sbjct: 93  GNLWRFPYLCY 103



 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 400 SPTNNRFFPGDAWRFPPLCWT 338
           +P N R+      R   LCWT
Sbjct: 194 NPWNTRYCLTPTERLEALCWT 214


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 376 PGDAWRFPPLCWTIRGQLASEPTSWHVLFVS 284
           P D  ++P     ++GQ+   P S  +LFVS
Sbjct: 363 PQDVDKYPAEGLEMKGQMVHCPESDSILFVS 393


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 131 VDFCESKTESLSNWVRQV 184
           V F    T ++S WVRQV
Sbjct: 336 VHFRSPSTHNMSPWVRQV 353



 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 405 SPWARQLFL 431
           SPW RQ+FL
Sbjct: 347 SPWVRQVFL 355


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 370 DAWRFPPLCW 341
           + WRFP LC+
Sbjct: 3   NVWRFPYLCY 12


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 117 KNLQLLTFVKVKQNLYRTG 173
           K LQ++  VK+ QNL  +G
Sbjct: 350 KTLQMIISVKIIQNLAYSG 368


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 123 LQLLTFVKVKQNLYRTG 173
           LQ++  +K+KQN+ ++G
Sbjct: 349 LQMVVSMKIKQNVPQSG 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,591
Number of Sequences: 438
Number of extensions: 2690
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)