Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30422
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    26   3.1  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   5.5  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    25   7.2  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    25   7.2  
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    25   9.5  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    25   9.5  

>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 401 SNKRPPHRLNRLRRTANTSSKPRYHSTDSETQXT 502
           S+ +P H LN    T      P Y+S+ SE   T
Sbjct: 222 SDMQPTHELNESPSTPTAPDFPHYNSSPSELSPT 255


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 468 DTTVRTQKHSXLGANTPADPLLIP 539
           DTT  T K   L  N PADP   P
Sbjct: 380 DTTTSTSKTGPLFGNKPADPSAKP 403


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 320 KCSLNSGGISSKGNLSKPLKLSQNR 246
           K +L   G+  + +++KP K+S+NR
Sbjct: 90  KLALRENGVLPRKSVAKPQKISENR 114


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 441 AQRTRAANPDTTVRTQKHSXLGANTPADPL 530
           A++T    P+T  +    S   AN+PA P+
Sbjct: 410 AEQTNGVKPETQAQNMSASESQANSPAPPV 439


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 134 SGAWSELAARHPDIAARLRQ 193
           S AW E   +HPD+  R+++
Sbjct: 180 SPAWDERFKKHPDVGDRMKR 199


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 223 TLQQRRY*RFCDNFSGFDRFPFDDIPPEF 309
           ++ +R+Y     N   FD  PF DIP  F
Sbjct: 169 SVSERKYKISLYNIKSFDARPFQDIPLTF 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,816
Number of Sequences: 5004
Number of extensions: 23109
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)