Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30422
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14...    28   5.5  
10_07_0134 + 13289641-13290216,13290435-13290914                       27   7.3  
10_08_0440 + 17930970-17931297,17931682-17931905,17932439-179324...    27   9.7  
10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869     27   9.7  
03_06_0601 + 34991912-34992352,34993719-34994516                       27   9.7  
01_06_0077 + 26215954-26216224,26216355-26216579,26217099-262172...    27   9.7  

>01_01_0020 +
           147147-147313,148450-148548,148634-148742,148856-148927,
           149056-149061,150811-150915,151048-151539,151629-152025,
           152178-153646,154010-154450,154543-155214
          Length = 1342

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 413 PPHRLNRLRRTANTSSKPRYHSTDSETQXTW 505
           P  ++  L  +AN+SSK    S+DS+++ +W
Sbjct: 599 PKFKVEILHDSANSSSKKSKRSSDSDSEASW 629


>10_07_0134 + 13289641-13290216,13290435-13290914
          Length = 351

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 155 LARSTRPSLPPPQTETPYHRGTP 87
           ++R   P  PPP  E+P +RG P
Sbjct: 244 ISRPAPPPPPPPANESPVNRGIP 266


>10_08_0440 +
           17930970-17931297,17931682-17931905,17932439-17932465,
           17933747-17934340
          Length = 390

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 122 EEEGSGAWSELAARHPDIAARLRQRPATWARK 217
           E EG G       R P+  +R +QR A W  K
Sbjct: 32  EIEGGGGEPSRKKRDPEAVSRFKQRSAAWFAK 63


>10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869
          Length = 526

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 149 RSTRPSLPPPQTETPYHRGTPA 84
           R   P  PPPQ + P+H   PA
Sbjct: 68  RHPPPPRPPPQQQHPHHHNRPA 89


>03_06_0601 + 34991912-34992352,34993719-34994516
          Length = 412

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 143 WSELAARHPDIAARLRQRPATWARKRRP 226
           WSE  ARHP++AA   +R    A +  P
Sbjct: 301 WSEYWARHPEMAAAASRRRGAAADEEGP 328


>01_06_0077 +
           26215954-26216224,26216355-26216579,26217099-26217247,
           26217353-26217629,26217956-26218236
          Length = 400

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 146 STRPSLPPPQTETPYHRGT 90
           S RPSL PP  ET +HR T
Sbjct: 59  SRRPSLWPPYGETFFHRAT 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,564,814
Number of Sequences: 37544
Number of extensions: 182307
Number of successful extensions: 736
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)