Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30422
         (542 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13946| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_18528| Best HMM Match : Homeobox (HMM E-Value=1.3e-16)              28   4.3  
SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.3  
SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)                   27   7.5  
SB_50693| Best HMM Match : C2 (HMM E-Value=0)                          27   9.9  
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_13946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 143 TRPSLPPPQTETPYHRGTPAACLILQVIPLSFN 45
           +RPS PPP T TPY +  P+     Q+I +S N
Sbjct: 66  SRPS-PPPPTYTPYEKAVPSLA-THQIIEISRN 96


>SB_18528| Best HMM Match : Homeobox (HMM E-Value=1.3e-16)
          Length = 390

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 92  YHGDRGFPFEEEEGSGAWSELAARHPDIAARLRQ 193
           + G  G P  E + S A ++    HPD+ A+L Q
Sbjct: 64  FSGSTGIPDNEAQSSKARNKRPVFHPDVVAQLEQ 97


>SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1230

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 326 DGKCSLNSGGISSKGNLSKPLKLSQNRQ 243
           DG  +L SGG+S  GN  KP++    R+
Sbjct: 360 DGNTALMSGGVSHFGNFYKPIQSDDYRR 387


>SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)
          Length = 750

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = +2

Query: 416 PHRLNRLRRT----ANTSSKPRYHSTDSETQXTWGEYSRR 523
           P+R+ +L R     +N  S+P  HS  S++  T G++SRR
Sbjct: 380 PNRVWKLTRVLPPLSNEKSQPSGHSESSQSVKTIGDHSRR 419


>SB_50693| Best HMM Match : C2 (HMM E-Value=0)
          Length = 1049

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 149 RSTRPSLPPPQTETPYHRGTPA 84
           +ST+P  P PQ+   + RG+PA
Sbjct: 846 QSTKPQSPKPQSPNIHRRGSPA 867


>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3259

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +2

Query: 131  GSGAWSELAARHPDIAARLRQRPATWARKR 220
            G+   S +A+  P  AA +RQRPAT AR+R
Sbjct: 930  GNRPSSRVASARPGTAA-VRQRPATTARQR 958


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,782,354
Number of Sequences: 59808
Number of extensions: 188497
Number of successful extensions: 567
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)