Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30422
         (542 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24210.1 68418.m02848 lipase class 3 family protein contains ...    31   0.38 
At5g63640.1 68418.m07990 VHS domain-containing protein / GAT dom...    27   6.1  

>At5g24210.1 68418.m02848 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 350

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 155 LARSTRPSLPPPQTETPYHRGTPAACLI 72
           L+RS  P +P P     YHR T A+CL+
Sbjct: 13  LSRSGPPQIPNPDWNNLYHRTTVASCLV 40


>At5g63640.1 68418.m07990 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to hepatocyte
           growth factor-regulated tyrosine kinase substrate HRS
           isoform 2 [Homo sapiens] GI:9022389; contains Pfam
           profiles PF00790: VHS domain, PF03127: GAT domain
          Length = 447

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 65  PVVLDKPPEYHGDRGFPFEEEEGSGA 142
           PVV+  PP  H +R   F+E +G GA
Sbjct: 393 PVVIPPPPAKHVEREKFFKENKGDGA 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,821,592
Number of Sequences: 28952
Number of extensions: 129138
Number of successful extensions: 419
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)