Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30420
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    31   0.084
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    29   0.34 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   1.4  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    27   1.8  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   1.8  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    27   1.8  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   4.2  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    25   5.5  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    25   5.5  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   5.5  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   5.5  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    25   5.5  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    24   9.6  
SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit...    24   9.6  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 31.1 bits (67), Expect = 0.084
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 303 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHT 428
           P +H    HH   P  V H+    DH P K+E   S  + H+
Sbjct: 390 PWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEEHCSCHEDHS 431



 Score = 28.7 bits (61), Expect = 0.45
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
 Frame = +3

Query: 303 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE-------FSYSVEDPHTG---DHKS-QH 449
           P +H    HH   P  V H+    DH P K+E         +S   PH G   DHK  +H
Sbjct: 307 PWKHEEHCHHGRFPRPVPHNGTKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPDHKPWKH 366

Query: 450 E 452
           E
Sbjct: 367 E 367



 Score = 28.3 bits (60), Expect = 0.59
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 303 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 398
           P +H    HH   P  V H+    DH P K+E
Sbjct: 195 PWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHE 226



 Score = 27.9 bits (59), Expect = 0.78
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 303 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 398
           P +H    HH   P  + H+    DH P K+E
Sbjct: 280 PWKHEEHCHHGKFPRPIPHNGTKPDHKPWKHE 311



 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 327 HHAAIPIAVEHSDHVEDHAPAKYE 398
           HH   P  V H+    DH P K+E
Sbjct: 176 HHDKFPRPVPHNGTKPDHKPWKHE 199



 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 327 HHAAIPIAVEHSDHVEDHAPAKYE 398
           HH   P  V H+    DH P K+E
Sbjct: 232 HHDKFPRPVPHNGTKPDHKPWKHE 255



 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 327 HHAAIPIAVEHSDHVEDHAPAKYE 398
           HH   P  V H+    DH P K+E
Sbjct: 261 HHDKFPRPVPHNGTKPDHKPWKHE 284


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 139 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPV 255
           P  Q T+  +P  SHAAP+   + P   H+ P + A PV
Sbjct: 63  PRKQTTS--SPSFSHAAPLHPLSPPSFTHSQPQIQAQPV 99


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 326 HDWSMLHRAEVLDYWRSMYI 267
           +D+S +   E +DYW+S+YI
Sbjct: 549 NDYSPMLSYEAIDYWKSLYI 568


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 289 SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHIPSR 417
           S  S  C  + S      +   NT  +S + LPR++S+ IP++
Sbjct: 181 SGRSIDCQWMDSVALNLSRYYGNTEALSSLPLPRNLSADIPAK 223


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 157 AHYTPVLSHAAPVLTHAAPL 216
           A +TPVL H + +L H +PL
Sbjct: 538 AEHTPVLKHTSSLLDHHSPL 557


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 346 LPSNTPIMSKIML--PRSMSSHIPSRIPTPAITSPN 447
           +PSNT I S   L  P   S++IP+ +PT  + S N
Sbjct: 455 VPSNTTISSSPPLTSPVKTSANIPNLLPTSELDSSN 490


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 127 ERCFGKTQHGRGPRL*H 77
           +RCFGKT  G  P L H
Sbjct: 415 KRCFGKTNDGSNPCLYH 431


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 344 WNRSVVHDWSMLHRAEVLDYW 282
           WN +   D+ +L+R+  +D W
Sbjct: 230 WNHAYYKDYGLLNRSRYIDTW 250


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 144 SSSNGTLYPSIESCCSSTDSRS 209
           S S  TL   +ESC  + DSRS
Sbjct: 304 SDSKATLIKIVESCLDAIDSRS 325


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 420  DPRRNMRTHTSREHDLRHDRSVRRQLESQRGAR 322
            D  R++  HT RE     + + RR+ ESQ+  R
Sbjct: 1440 DNLRSVSRHTRREPQQAQNLNARREHESQKSDR 1472


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 25  MFFKIAVVCSILAICQGGVIDEGHGHAVSSQSIVRHDEPSHQATAH 162
           + F +A++CS+L    GGV+  GH      ++ VR   PS++A  +
Sbjct: 92  LIFIVALICSVLIGVLGGVL--GH------RTAVRDRHPSYKAKTY 129


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 315 APVVHHAAIPIAVEHSDHVED 377
           +P +  + IP++ EHSD VE+
Sbjct: 201 SPEIAKSGIPLSSEHSDDVEE 221


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 208 LRESVLEQHDSILG-YNVPL 152
           +R+  L +HDSILG  N+PL
Sbjct: 748 VRDFKLREHDSILGVVNIPL 767


>SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit
           7a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 301 ALCNMLQSCTTLRFQLPSNTPIMSK 375
           +L   ++ C+ + FQL + TP +SK
Sbjct: 149 SLDRFIERCSNILFQLDAGTPSVSK 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,435
Number of Sequences: 5004
Number of extensions: 42198
Number of successful extensions: 176
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)