Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30420
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169 30 1.0
10_08_0738 - 20212220-20212282,20212387-20212593,20212690-202128... 29 1.8
04_01_0471 + 6099768-6100094,6100384-6100416 29 1.8
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 29 1.8
04_04_0776 - 28000220-28000337,28000760-28000872,28001194-280012... 29 2.3
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 28 3.1
02_03_0167 - 15923872-15925683 28 4.1
02_03_0131 - 15576422-15577021 28 4.1
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 27 5.4
11_06_0163 + 20821109-20821250,20827123-20827415,20828279-20830426 27 7.2
09_06_0144 + 21149338-21150651 27 7.2
05_04_0176 + 18749945-18749969,18750186-18750751,18750876-187509... 27 7.2
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 7.2
03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597... 27 7.2
04_04_0512 + 25806599-25808080 27 9.5
>03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169
Length = 515
Score = 29.9 bits (64), Expect = 1.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 116 WEDTAWPWPSSITPPWQIAK 57
W+D WPSS + PW++ K
Sbjct: 227 WQDVLLLWPSSSSSPWELTK 246
>10_08_0738 -
20212220-20212282,20212387-20212593,20212690-20212819,
20212919-20213089,20213311-20213433,20213517-20213618,
20214123-20214880
Length = 517
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 113 EDTAWPWPSSITPPWQIAKIEQTTAIL 33
E WP P S PP ++ K EQT ++
Sbjct: 136 EAARWPPPPSFQPPIEVIKAEQTAPLI 162
>04_01_0471 + 6099768-6100094,6100384-6100416
Length = 119
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 48 LLDFGYLPRWCYRRGPRPC-CVFPKHR 125
+L+F +LPR RRG R C V P H+
Sbjct: 67 VLNFAFLPRTSLRRGARACRIVVPHHK 93
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = -3
Query: 420 DPRRNMRTHTSREH-DLRHDRSV----RRQLESQRG 328
+PR R TSR+H RHDRSV R Q S RG
Sbjct: 292 EPRSKRRRSTSRDHYQERHDRSVSPSSREQRHSYRG 327
>04_04_0776 -
28000220-28000337,28000760-28000872,28001194-28001289,
28001647-28001763,28002136-28002267,28002348-28002524,
28002660-28002837,28003270-28003373,28003922-28003996
Length = 369
Score = 28.7 bits (61), Expect = 2.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 13 RHLNMFFKIAVVCSILAICQGGVI 84
RH+ + + A VC +A+C+GG +
Sbjct: 22 RHVQILKRSAAVCGAVAVCRGGAV 45
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 295 CWTTGEAC--IYEECSRERREQ*DRHVESKGLRESVLEQHDSILGYNVPLL 149
C TGE C + +EQ D H LR+ +L+ +DS+ GY + L
Sbjct: 377 CEPTGELCANLCRNLGAHLKEQ-DGHPSFSELRKVLLDNYDSLSGYALSCL 426
>02_03_0167 - 15923872-15925683
Length = 603
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -1
Query: 431 AGVGILDGI*ELILRGSMIFDMIGVFDGNWNRSVVHDWSML 309
AG+ +L+ + +++RGS + +FDG N+SVV W+ L
Sbjct: 187 AGLPVLNSVLTMLVRGSHLDAARLLFDGICNKSVV-TWTAL 226
>02_03_0131 - 15576422-15577021
Length = 199
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -3
Query: 450 RVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGAR 322
R G DR PR R H R+ D DR R E +RG R
Sbjct: 20 RDGERDRELDRPRD--RDHRDRDRDKERDRDRDRDRERRRGER 60
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 22 NMFFKIAVVCSILAICQGGVIDEGHGHAVSSQSIVRHDEPS-HQATAHYTPVLSHAAP 192
N+F I +C I + + GV E + VS +S+ R S + H+ LS P
Sbjct: 66 NLFGFIGAICLIFVVTKAGVDAENSSNVVSVRSVKRDQICSPTRPDRHWVQTLSLLVP 123
>11_06_0163 + 20821109-20821250,20827123-20827415,20828279-20830426
Length = 860
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 279 KHVYTKNVHGSGVNNRTGMLN 217
K++ KN GSG NRTG +N
Sbjct: 809 KNIVAKNDKGSGFKNRTGPVN 829
>09_06_0144 + 21149338-21150651
Length = 437
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 315 APVVHHAAIPIAVEHSDHVE-DHAPAKYEFSYSVEDPH 425
AP VHH A S HVE DH +Y + +D H
Sbjct: 177 APPVHHHAALFKPRPSPHVEHDHRNREYYLPAAGDDSH 214
>05_04_0176 +
18749945-18749969,18750186-18750751,18750876-18750944,
18752128-18752325,18752791-18752922,18753658-18753744,
18753845-18754288,18754644-18754811,18755129-18755359,
18755893-18756008,18756125-18756407
Length = 772
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 133 DEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAA 249
DE Q + P+LS A V+ AAP+++ +V AA
Sbjct: 170 DEKVMQLISIEKPILSEAVAVIRKAAPMMEEVELLVDAA 208
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 358 TPIMSKIMLPRSMSSHIPSRIPTPAITSPNT 450
TP M+ + P +M S + + TPA+T+P T
Sbjct: 315 TPFMNPVTAP-TMPSPVTNPATTPAVTNPTT 344
>03_04_0169 -
17959262-17959304,17959441-17959532,17959682-17959759,
17959938-17960075,17960174-17960302,17960556-17960685,
17960797-17960974,17961177-17961315,17961399-17961488,
17961633-17961794,17961966-17962130,17962250-17962387,
17962827-17963006,17963405-17963533,17963878-17964113,
17964233-17964395,17965260-17965628,17965724-17965828
Length = 887
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -3
Query: 309 AQG*SVGLLAKHVYTKNVHGSGVNNRTGMLNQRGCVSQYWSSMTQYWGIMC 157
AQG SV L+ ++V G+N G+L RG ++ + + + + WG C
Sbjct: 433 AQGKSVILVRTETSPEDV--GGMNAAAGILTARGGMTSHAAVVARGWGKCC 481
>04_04_0512 + 25806599-25808080
Length = 493
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/39 (23%), Positives = 21/39 (53%)
Frame = +3
Query: 339 IPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHET 455
+P V +S+ + +HA ++ P GD +++H++
Sbjct: 392 LPEYVSNSEELSNHATFNHKVEEDSSSPAAGDRENEHDS 430
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,009,612
Number of Sequences: 37544
Number of extensions: 312769
Number of successful extensions: 1091
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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