Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30420
(455 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 37 0.007
SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.009
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031) 36 0.016
SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043) 35 0.037
SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017) 33 0.15
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33) 32 0.20
SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6) 32 0.26
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.34
SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.34
SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8) 30 0.79
SB_58551| Best HMM Match : GLTT (HMM E-Value=5.7e-23) 30 0.79
SB_46011| Best HMM Match : DNA_ligase_ZBD (HMM E-Value=2.9) 30 0.79
SB_34294| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_8567| Best HMM Match : EB (HMM E-Value=2.3) 29 1.8
SB_25525| Best HMM Match : ABC1 (HMM E-Value=1.19993e-41) 29 2.4
SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2) 28 3.2
SB_41288| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_35669| Best HMM Match : CCT (HMM E-Value=9.1) 28 4.2
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_58339| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_36300| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_33718| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_4465| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 27 5.6
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17) 27 5.6
SB_48764| Best HMM Match : RhoGAP (HMM E-Value=0) 27 5.6
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0) 27 5.6
SB_59101| Best HMM Match : PT (HMM E-Value=0.026) 27 7.4
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23) 27 7.4
SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37) 27 7.4
SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06) 27 9.7
SB_32118| Best HMM Match : PPC (HMM E-Value=0.39) 27 9.7
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31) 27 9.7
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 27 9.7
SB_11408| Best HMM Match : zf-C2H2 (HMM E-Value=0.072) 27 9.7
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 37.1 bits (82), Expect = 0.007
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 169 PVLSHAAPVLTHAAPLIQHAGPIVHAAPVNILRIY 273
PV+ H AP++ H P++ H P+V AP+ + +Y
Sbjct: 463 PVVYHQAPLVVHKPPIVYHRPPVVMPAPIYHMPVY 497
Score = 32.3 bits (70), Expect = 0.20
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 106 VSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 252
V+ I+ H P H ++ H AP+L H P++ H P+V P
Sbjct: 21 VNRPPIIYHPPPE---VYHRPEIVVHRAPILIHRPPIVYHQPPVVVHRP 66
Score = 31.1 bits (67), Expect = 0.45
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 106 VSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 252
V+ I+ H P H ++ H AP++ H P+I H P++ P
Sbjct: 1517 VNRPPIIYHPPPE---VYHRPDIVVHRAPIVLHRPPIIYHQPPVIVHRP 1562
Score = 30.7 bits (66), Expect = 0.60
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 106 VSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHA 246
V SIV H +PS H P++ H PV+ H P + H P++H+
Sbjct: 725 VHRPSIVYH-QPS--VVVHRPPIIYHQPPVMFHQPPPLVHQ-PVLHS 767
Score = 30.7 bits (66), Expect = 0.60
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 127 RHDEPSHQA--TAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 252
R D H+A H P++ H PV+ H ++ H PIV P
Sbjct: 1533 RPDIVVHRAPIVLHRPPIIYHQPPVIVHRPAVVYHQPPIVFHQP 1576
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 252
H P++ H PV+ H ++ H PIV P
Sbjct: 50 HRPPIVYHQPPVVVHRPAVVYHQPPIVFHQP 80
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 172 VLSHAAPVLTHAAPLIQHAGPIVHAAP 252
V+ PV+ H APL+ H PIV+ P
Sbjct: 457 VIVQRPPVVYHQAPLVVHKPPIVYHRP 483
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 252
H ++ H A V+ H P++ H P+V P
Sbjct: 268 HQPSIVYHQASVVIHRPPIVYHQPPVVFHQP 298
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 127 RHDEPSHQA--TAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVNILR 267
R D HQ H V+ H V+ H P++ H P+V P ++R
Sbjct: 554 RPDVVVHQPDYVIHRPSVVYHQPSVVVHRPPIVYHQPPVVFHQPPPMVR 602
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 121 IVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAPVNILR 267
I +HD+ V+ + P++ H P + H I VH AP+ I R
Sbjct: 2 IDKHDKKKRSPETKKKDVVVNRPPIIYHPPPEVYHRPEIVVHRAPILIHR 51
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 252
H ++ H V+ H P+I H+ P+V P
Sbjct: 1084 HQPSIVYHQPSVVVHRPPIIYHSPPVVFHQP 1114
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGP-IVHAAP 252
H V+ H APV+ H ++ H P +VH P
Sbjct: 1384 HRPSVVLHQAPVVVHRPAVVYHQPPVVVHQPP 1415
>SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 36.7 bits (81), Expect = 0.009
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Frame = +3
Query: 273 HASPVVQHFSP--VQHAP-VVHHAAIPIAVEHSDHVEDHAPAKYEFS-YSVE-DPHTGDH 437
H+S VQH SP VQH+P V H+ P V+HS + H+P + S Y+V+ P+T H
Sbjct: 87 HSSCTVQH-SPYTVQHSPYTVQHS--PCTVQHSPYTVQHSPCTVQHSPYTVQHSPYTVQH 143
Score = 36.3 bits (80), Expect = 0.012
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Frame = +3
Query: 273 HASPVVQHFSP--VQHAP-VVHHAAIPIAVEHSDHVEDHAPAKYEFS-YSVE-DPHTGDH 437
H+S VQH SP VQH+P V H+ P V+HS + H+P + S Y+V+ P+T H
Sbjct: 229 HSSYTVQH-SPYTVQHSPYTVQHS--PYTVQHSSYTVQHSPYTVQHSPYTVQHSPYTVQH 285
Score = 34.3 bits (75), Expect = 0.048
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +3
Query: 270 IHASPVVQHFSP--VQHAP-VVHHAAIPIAVEHSDHVEDHAPAKYEFS-YSVE-DPHTGD 434
I S +SP VQH+P V H+ P V+HS + H+P + S Y+V+ P+T
Sbjct: 29 IQYSTAHTQYSPYTVQHSPYTVQHS--PYTVQHSSYTVQHSPYTVQHSPYTVQHSPYTAQ 86
Query: 435 HKS 443
H S
Sbjct: 87 HSS 89
Score = 34.3 bits (75), Expect = 0.048
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +3
Query: 273 HASPVVQHFSP--VQHAP-VVHHAAIPIAVEHSDHVEDHAPAKYEFS-YSVE-DPHTGDH 437
H+ VQH SP VQH+P V H+ P V+HS + H+P + S Y+V+ P+T H
Sbjct: 320 HSPYTVQH-SPYTVQHSPYTVQHS--PYTVQHSQYTVQHSPYTVQHSPYTVQHSPYTVQH 376
Score = 33.5 bits (73), Expect = 0.085
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +3
Query: 288 VQHFSP--VQHAP-VVHHAAIPIAVEHSDHVEDHAPAKYEFS-YSVE-DPHTGDHKS 443
+QH SP VQH+P V H+ P V+HS + H+P + S Y+V+ P+T H S
Sbjct: 206 IQH-SPYTVQHSPYTVQHS--PYTVQHSSYTVQHSPYTVQHSPYTVQHSPYTVQHSS 259
Score = 32.3 bits (70), Expect = 0.20
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +3
Query: 273 HASPVVQHFSP--VQHAP-VVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKS 443
H+ VQH SP VQH+P V H+ P V+HS + + +F YS P
Sbjct: 136 HSPYTVQH-SPYAVQHSPYTVQHS--PYTVQHSPYTAQPIYSTAQFIYSTAQPIYSTAHR 192
Query: 444 QHET 455
QH T
Sbjct: 193 QHST 196
Score = 28.7 bits (61), Expect = 2.4
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Frame = +3
Query: 273 HASPVVQHFSP--VQHAP-VVHHAAI-----PIAVEHSDHVEDHAPAKYEFS-YSVE-DP 422
H+ VQH SP VQH+P H++ P V+HS + H+P + S Y+V+ P
Sbjct: 66 HSPYTVQH-SPYTVQHSPYTAQHSSCTVQHSPYTVQHSPYTVQHSPCTVQHSPYTVQHSP 124
Query: 423 HTGDH 437
T H
Sbjct: 125 CTVQH 129
>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
Length = 1099
Score = 35.9 bits (79), Expect = 0.016
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 139 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGP-IVHAAPVNILR 267
PSH H P++ H P++ H PLI H P +VH P+ I R
Sbjct: 953 PSH--LIHRPPIILHRPPLIVHRHPLIFHRPPLLVHRMPIIIRR 994
Score = 33.5 bits (73), Expect = 0.085
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 270 IHASPVVQHFSP-VQHAP-VVHHAAIPIAVEHSDHVEDHAP 386
IH P++ H P + H P +VHH + + HS HV H P
Sbjct: 1020 IHRMPILIHHHPWLIHRPAIVHHYGPNLMISHSHHVIHHYP 1060
Score = 32.7 bits (71), Expect = 0.15
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 252
H ++ H AP++ H AP+I H P+V P
Sbjct: 316 HRPDIVVHRAPIMIHRAPIIYHQPPVVVHRP 346
Score = 32.7 bits (71), Expect = 0.15
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 85 DEGHGHAVSSQSIVRHDEPS--HQA--TAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 252
D+ + + I+ H P H+ H P++ H AP++ H P+I H IV+ P
Sbjct: 453 DKKNNVIIKRPPIIYHPPPEIFHRPDIVVHRAPLMVHRAPIIYHQPPVIVHRPAIVYHQP 512
Score = 32.3 bits (70), Expect = 0.20
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 252
H P++ H AP++ H P++ H IV+ P
Sbjct: 323 HRAPIMIHRAPIIYHQPPVVVHRPAIVYHQP 353
Score = 30.3 bits (65), Expect = 0.79
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGPIV-HAAPVNILR 267
H P + H ++ H AP++ H PI+ H PV + R
Sbjct: 309 HPPPEIYHRPDIVVHRAPIMIHRAPIIYHQPPVVVHR 345
Score = 30.3 bits (65), Expect = 0.79
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 252
H ++ H AP++ + AP+I H P+V P
Sbjct: 691 HRPDIIVHRAPIVLYRAPIIYHQPPVVVHRP 721
Score = 30.3 bits (65), Expect = 0.79
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Frame = +1
Query: 100 HAVSSQSIVRHDEP----SHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 252
H + I+ H P H H P+L H P++ PL+ H P++ P
Sbjct: 955 HLIHRPPIILHRPPLIVHRHPLIFHRPPLLVHRMPIIIRRPPLLIHRMPLIVHRP 1009
Score = 29.9 bits (64), Expect = 1.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 252
H P++ H PV+ H ++ H PI+ P
Sbjct: 173 HRPPIIYHQPPVIVHRPAVVYHQPPIIFHQP 203
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 118 SIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIV-HAAPVNILR 267
S+V H P H P + H ++ H AP++ + PI+ H PV + R
Sbjct: 673 SVVIHRPP---IIYHPPPEIYHRPDIIVHRAPIVLYRAPIIYHQPPVVVHR 720
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +1
Query: 106 VSSQSIVRHDEPS--HQA--TAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 252
V+ I+ H P H+ H P++ H P++ H P+I H +V+ P
Sbjct: 144 VNRPPIIYHPPPEIYHRPDIVVHRPPLVIHRPPIIYHQPPVIVHRPAVVYHQP 196
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVNILR 267
H P++ H PV+ H ++ H IV P ++R
Sbjct: 330 HRAPIIYHQPPVVVHRPAIVYHQPSIVFHQPPPVVR 365
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 112 SQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAPV 255
++S E + P++ H P + H ++ H PI +H AP+
Sbjct: 286 TKSKTEKGEKKNSVVIRRPPIIYHPPPEIYHRPDIVVHRAPIMIHRAPI 334
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAPVNILRIYML 279
H P++ P+L H PLI H + VH P+ I R+ +L
Sbjct: 986 HRMPIIIRRPPLLIHRMPLIVHRPDLMVHRPPLIIHRMPIL 1026
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVNIL 264
H P++ H P+L H P + H IVH N++
Sbjct: 1014 HRPPLIIHRMPILIHHHPWLIHRPAIVHHYGPNLM 1048
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGP-IVHAAPV 255
H P+L H L H P+I H P IVH P+
Sbjct: 944 HRPPILFHPPSHLIHRPPIILHRPPLIVHRHPL 976
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 127 RHDEPSHQAT--AHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 252
R D H+A H P++ H PV+ H ++ H +V P
Sbjct: 476 RPDIVVHRAPLMVHRAPIIYHQPPVIVHRPAIVYHQPELVFHQP 519
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAP 252
H P++ H ++ H PLI H PI +H P
Sbjct: 1000 HRMPLIVHRPDLMVHRPPLIIHRMPILIHHHP 1031
>SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043)
Length = 908
Score = 34.7 bits (76), Expect = 0.037
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +1
Query: 100 HAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVNILRIYML 279
H + + +R+ PS+ T + P+ P T ++H + ++ P N L + +
Sbjct: 755 HTLKYLTTLRYSGPSN--TPLHFPIPDPRKPRYTSLFRTLEHLTTLRYSTPSNTLLYFAI 812
Query: 280 R--Q*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRS 393
+ + ++L + L+ TTLR+ PSNT + I PR+
Sbjct: 813 PHPRTPHYTSLFHTLEHLTTLRYSGPSNTSLHFAIPHPRT 852
Score = 29.5 bits (63), Expect = 1.4
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Frame = +1
Query: 124 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVNILRIYMLR--Q*SNT 297
+R+ PS+ T Y + P T ++H + ++ P N + + + +
Sbjct: 798 LRYSTPSN--TLLYFAIPHPRTPHYTSLFHTLEHLTTLRYSGPSNTSLHFAIPHPRTPHY 855
Query: 298 SALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHIPSRIPT 426
++L + L+ TTLR+ PSNT + +P + H S I T
Sbjct: 856 TSLFHTLEHLTTLRYSTPSNTSL--HFAIPDPQTPHYTSLIRT 896
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 298 SALCNMLQSCTTLRFQLPSNTPIMSKIMLPR 390
++L + L+ TTLR+ PSNTP+ I PR
Sbjct: 751 TSLFHTLKYLTTLRYSGPSNTPLHFPIPDPR 781
Score = 27.9 bits (59), Expect = 4.2
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 154 TAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVNILRIYMLR--Q*SNTSALCNMLQSC 327
T +YT + P T ++H + ++ P N L + + Q + +L + L+
Sbjct: 598 TPNYT--FAKPKPHQTSLFRTLEHYTTLRYSGPSNTLLHFAIPDPQTPHYISLFHTLEHL 655
Query: 328 TTLRFQLPSNTPIMSKIMLPRS 393
TTLR+ PSNT + I P++
Sbjct: 656 TTLRYSTPSNTSLHFAIPDPQT 677
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/59 (22%), Positives = 27/59 (45%)
Frame = +3
Query: 279 SPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHET 455
S + HF+ + H + H+ ++ ++H P+K +++ DP T + S T
Sbjct: 699 SNTLLHFA-IPHPQIPHYTSLFRTLKHPTTFPYSGPSKTSLHFAISDPRTPYYTSLFHT 756
>SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 32.7 bits (71), Expect = 0.15
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVNILRIYMLRQ*SN 294
H P L H P+L H P++ H P++ I ++Y + Q N
Sbjct: 80 HTRPTLGHTRPMLGHTRPMLGHTHPLLGHTCRLIAKVYSVGQNCN 124
>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
Length = 1495
Score = 32.7 bits (71), Expect = 0.15
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = -3
Query: 342 ESQRGARLEHVAQG*SVGLLAKHVYTKNVHGSGVNNRTGMLNQRGCVSQYWSSMTQYW 169
+SQ GA VAQG +VGL A Y NV GV+ M Q Q + TQ W
Sbjct: 189 QSQGGASTAPVAQGGAVGLPANEQYQGNVTQQGVS----MQQQYQWQQQPYQQQTQQW 242
>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
Length = 958
Score = 32.3 bits (70), Expect = 0.20
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Frame = +1
Query: 100 HAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVNILRIYML 279
H + + +R+ PS+ T + P+ P T ++H + ++ P N + +
Sbjct: 704 HTLKYLTTLRYSGPSN--TPLHFPIPDPRKPRYTSLFRTLEHLTTLRYSTPSNTSLHFAI 761
Query: 280 R--Q*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRS 393
+ + ++L + L+ TTLR+ PSNT + I PR+
Sbjct: 762 PHPRTPHYTSLFHTLEHLTTLRYSTPSNTLLYFAIPHPRT 801
Score = 31.5 bits (68), Expect = 0.34
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = +1
Query: 100 HAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVNILRIYML 279
H + + +R+ PS+ T + + P T ++H + ++ P N + +
Sbjct: 844 HTLEHLTTLRYSTPSN--TLLHFAIPDPRTPYYTSLFHTLEHLTTLRYSGPSNTSLHFAI 901
Query: 280 R--Q*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRS 393
+ + ++L + L+ TTLR+ PSNT + I PR+
Sbjct: 902 PHPRTPHYTSLFHTLEHLTTLRYSTPSNTSLHFAIPHPRT 941
Score = 30.7 bits (66), Expect = 0.60
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +1
Query: 124 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVNILRIYMLR--Q*SNT 297
+R+ PS+ T+ + + P T ++H + ++ P N L + + + +
Sbjct: 747 LRYSTPSN--TSLHFAIPHPRTPHYTSLFHTLEHLTTLRYSTPSNTLLYFAIPHPRTPHY 804
Query: 298 SALCNMLQSCTTLRFQLPSNTPIMSKIMLPRS 393
++L L+ TTLR+ PSNT + I PR+
Sbjct: 805 TSLFRTLKYLTTLRYSTPSNTSLHFAIPHPRT 836
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 298 SALCNMLQSCTTLRFQLPSNTPIMSKIMLPR 390
++L + L+ TTLR+ PSNTP+ I PR
Sbjct: 700 TSLFHTLKYLTTLRYSGPSNTPLHFPIPDPR 730
Score = 28.3 bits (60), Expect = 3.2
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = +1
Query: 100 HAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVNILRIYML 279
H + + +R+ PS+ T Y + P T +++ + ++ P N + +
Sbjct: 774 HTLEHLTTLRYSTPSN--TLLYFAIPHPRTPHYTSLFRTLKYLTTLRYSTPSNTSLHFAI 831
Query: 280 R--Q*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRS 393
+ + ++L + L+ TTLR+ PSNT + I PR+
Sbjct: 832 PHPRTPHYTSLFHTLEHLTTLRYSTPSNTLLHFAIPDPRT 871
Score = 27.9 bits (59), Expect = 4.2
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 154 TAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVNILRIYMLR--Q*SNTSALCNMLQSC 327
T +YT + P T ++H + ++ P N L + + Q + +L + L+
Sbjct: 547 TPNYT--FAKPKPHQTSLFRTLEHYTTLRYSGPSNTLLHFAIPDPQTPHYISLFHTLEHL 604
Query: 328 TTLRFQLPSNTPIMSKIMLPRS 393
TTLR+ PSNT + I P++
Sbjct: 605 TTLRYSTPSNTSLHFAIPDPQT 626
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/59 (22%), Positives = 27/59 (45%)
Frame = +3
Query: 279 SPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHET 455
S + HF+ + H + H+ ++ ++H P+K +++ DP T + S T
Sbjct: 648 SNTLLHFA-IPHPQIPHYTSLFRTLKHPTTFPYSGPSKTSLHFAISDPRTPYYTSLFHT 705
>SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6)
Length = 249
Score = 31.9 bits (69), Expect = 0.26
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 160 HY-TPVLSHAAPVLTHAAPLIQHAGPIVH 243
HY TP+ H P L H PL QH P+ H
Sbjct: 62 HYKTPLRHHKTPYLQHKTPLRQHKTPLRH 90
Score = 31.1 bits (67), Expect = 0.45
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 127 RHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAPV 255
+H P Q H TP+ H P+ H PL QH P+ H P+
Sbjct: 153 QHKTPLRQ---HKTPLRQHKTPLRQHKTPLRQHKTPLRQHKTPL 193
Score = 30.3 bits (65), Expect = 0.79
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAPV 255
H TP+ H P+ H PL QH P+ H P+
Sbjct: 147 HKTPLRQHKTPLRQHKTPLRQHKTPLRQHKTPL 179
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 127 RHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAPV 255
+H P Q H TP+ H P+ + PL QH P+ H P+
Sbjct: 118 QHKTPLRQ---HKTPLRQHKTPLRQYKTPLRQHKTPLRQHKTPL 158
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 127 RHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAPV 255
+H P Q + TP+ H P+ H PL QH P+ H P+
Sbjct: 132 QHKTPLRQ---YKTPLRQHKTPLRQHKTPLRQHKTPLRQHKTPL 172
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 127 RHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 225
+H P Q H TP+ H P+ H PL QH
Sbjct: 167 QHKTPLRQ---HKTPLRQHKTPLRQHKTPLRQH 196
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQH 225
H TP+ H P+ H PL QH
Sbjct: 77 HKTPLRQHKTPLRHHKTPLRQH 98
>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1446
Score = 31.5 bits (68), Expect = 0.34
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Frame = +1
Query: 109 SSQSIVRHDEPSHQATA-HYTPVLSHAAPVLTHAAP---LIQHAGPIVHAAPVNILRIYM 276
SS + + H P+H ATA T L H + + +P + H P + +
Sbjct: 969 SSTASLAHTSPAHLATASQITHPLPHRTISIPYPSPPHTTSSQSSQATHTPPPRAVDLPH 1028
Query: 277 LRQ*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHIPSRIPTPAITS 441
++SAL + + L + +NT I S+ P S +S PS T T+
Sbjct: 1029 PSSPHSSSALYSSPSRTSNLPYTTYTNTAISSQPSPPYSSTSPHPSHFSTRVSTN 1083
>SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1457
Score = 31.5 bits (68), Expect = 0.34
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 279 SPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 422
SPV +H +H+ V H+++ EHS V +H+P FS S P
Sbjct: 1302 SPVSEHSRVSEHSSVSEHSSVS---EHSP-VSEHSPVSEHFSVSEHSP 1345
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 279 SPVVQHFSPVQHAPVVHHAAIPIAVEHSDH--VEDHAP 386
SPV +HFS +H+PV + + S+H V +H+P
Sbjct: 1332 SPVSEHFSVSEHSPVSKQSPVSEQSPVSEHSPVSEHSP 1369
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 279 SPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 422
S V +H S +H+PV H+ P++ EH V +H+P + S + P
Sbjct: 1314 SSVSEHSSVSEHSPVSEHS--PVS-EHFS-VSEHSPVSKQSPVSEQSP 1357
>SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 30.7 bits (66), Expect = 0.60
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 100 HAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 225
H +S IVRH + S H+ + H + H++ +I+H
Sbjct: 31 HHQTSSDIVRHHQTSSDIIRHHQTFIRHHQTFIRHSSDIIRH 72
>SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8)
Length = 476
Score = 30.3 bits (65), Expect = 0.79
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 273 HASPVVQHFSPV-QHA-PVVHHAAIPIAVEHSDHVEDHA 383
H+ P+ H P+ H+ P+ H+ P+ +HSDHV DH+
Sbjct: 435 HSDPLTDHSDPLTDHSDPLTDHSD-PLT-DHSDHVTDHS 471
>SB_58551| Best HMM Match : GLTT (HMM E-Value=5.7e-23)
Length = 272
Score = 30.3 bits (65), Expect = 0.79
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 346 IGIAAWCTTGACCTGLKCWTTG 281
IG CTTG C TG+ WTTG
Sbjct: 97 IGTTGICTTGICTTGI--WTTG 116
>SB_46011| Best HMM Match : DNA_ligase_ZBD (HMM E-Value=2.9)
Length = 373
Score = 30.3 bits (65), Expect = 0.79
Identities = 35/135 (25%), Positives = 51/135 (37%)
Frame = +1
Query: 49 CSILAICQGGVIDEGHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHA 228
C L I G+ + H +S + HD Q T HY P L P +T L +H
Sbjct: 93 CPTLLIKTPGITAQ---HCLSKHPALLHDIDC-QNTRHYCPTLLIKTPGITAQYCLSKHP 148
Query: 229 GPIVHAAPVNILRIYMLRQ*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHI 408
+ + A N YM + + L N+ +C R P+ I +S H
Sbjct: 149 ALLPNIACQNTRHYYMTLLVKHAALLPNI--ACQNTRRYCPTLLMKTPGITAQHCLSKH- 205
Query: 409 PSRIPTPAITSPNTK 453
P +P I NT+
Sbjct: 206 PVLLPN--IACQNTR 218
>SB_34294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 145 HQATAHYTPVLSHAAPVLTHAAPLIQHAGP 234
H H TP HA P HA P HA P
Sbjct: 38 HPYKNHATPYKDHATPYKDHATPYKDHATP 67
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 29.9 bits (64), Expect = 1.0
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -3
Query: 411 RNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG*SVGLLAKHVYTKNVHGSGVNNR 232
R R H ++ R++R+ +RQL AR+E +QG +GL + +T+ SG R
Sbjct: 1486 RGRRCH--EDNSRRYERAAQRQLNLDNTARVEQTSQG-QLGLRREEEHTRQ---SGWRER 1539
Query: 231 TG 226
G
Sbjct: 1540 RG 1541
>SB_8567| Best HMM Match : EB (HMM E-Value=2.3)
Length = 179
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 328 CTTGACCTGLKCWTTGEACIYEECS 254
C TGA C G++C +TG C ECS
Sbjct: 128 CPTGAHCEGVEC-STGTHCEGVECS 151
>SB_25525| Best HMM Match : ABC1 (HMM E-Value=1.19993e-41)
Length = 1008
Score = 28.7 bits (61), Expect = 2.4
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = +1
Query: 190 PVLTHAAPLIQHAGPIVHAAPVNILRIYMLRQ*SNTSALCNMLQSCTTLRFQLPSNTPIM 369
P H A L+ A I +PV + + R S + A C SC + L S P +
Sbjct: 930 PCHVHQASLLSRAPSI---SPVTCTKHLLSRAPSISPATCIKHLSCHVHQASLLSRAPSI 986
Query: 370 SKIMLPRSMSSHIPSRIP 423
S + + +S H+ P
Sbjct: 987 SPVTCTKHLSCHVHQASP 1004
>SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2)
Length = 356
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 121 IVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVNI 261
I+ H P H ++ H AP++ H +I H P+V P I
Sbjct: 157 IIYHPPPE---VYHRPDIVVHRAPIMLHRPAIIYHQPPVVVHRPAII 200
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 252
H ++ H PV+ H +I H PIV P
Sbjct: 181 HRPAIIYHQPPVVVHRPAIIYHQPPIVFHQP 211
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 160 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPV 255
H PV+ H ++ H P++ H P V P+
Sbjct: 188 HQPPVVVHRPAIIYHQPPIVFHQPPPVVNQPI 219
>SB_41288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 109 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 225
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
>SB_35669| Best HMM Match : CCT (HMM E-Value=9.1)
Length = 101
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 109 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 225
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -3
Query: 174 YWGIMCRCLMRRLVMANDALGRHSMAVALVYNTTLANSQNRADYSN 37
Y G+MC + + +D+ RH M + L+ ++ ++R D N
Sbjct: 165 YIGVMCDRCSHKAIRKSDSKNRHDMELPLLLPPCNSSKRSRHDSEN 210
>SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 43 VVCSILAICQGGVIDEGHGHAVSSQSI 123
+V ++ I +GGV+D HG A+ S++I
Sbjct: 158 LVMAMETIGEGGVVDNSHGKALDSKNI 184
>SB_58339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 109 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 225
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
>SB_36300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = -3
Query: 444 GTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQ 304
G CDR+ + ++R + + HD+ +++ + + GAR E +++
Sbjct: 29 GACDRKAATIKSHIRQYVNEGHDVVTAANLQEAILADGGARGEGISE 75
>SB_33718| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 109 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 225
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
>SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 109 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 225
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
>SB_4465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 109 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 225
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 349 PSNTPIMSKIMLP-RSMSSHIPSRIPTPAITSPNTK 453
P+ K++LP RS + PSR+PTP+ +P+ +
Sbjct: 328 PAGPKKPDKLILPDRSSPTGKPSRVPTPSKATPSKR 363
>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
Length = 1860
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Frame = +1
Query: 130 HDEPSHQATA----HYT---PVLSHAAPVLTHAAPLIQHAGPIVH 243
HD+ +H T YT P L H A +L H + QH I H
Sbjct: 709 HDDENHPVTTTCRCEYTEQAPTLQHCATLLAHTLLINQHIKAICH 753
>SB_48764| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 583
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +1
Query: 106 VSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVNILR 267
V+ +V+ P H T Y +L H A V +HA HA + N+L+
Sbjct: 115 VAIHHVVQQLPPPHYRTLEY--LLQHLAKVASHAGQTAMHAKNLAIVWAPNLLK 166
>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1432
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 363 DHVEDHAPAKYEFSYSVEDPH-TGDHKSQH 449
D DH P YE SY ED H + ++ S H
Sbjct: 1355 DRGTDHLPRSYEKSYRREDHHRSREYSSDH 1384
>SB_59101| Best HMM Match : PT (HMM E-Value=0.026)
Length = 386
Score = 27.1 bits (57), Expect = 7.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 113 EDTAWPWPSSITPPWQ 66
++TA PW SI PWQ
Sbjct: 302 QNTAQPWQQSIAQPWQ 317
>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
Length = 434
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 94 HGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAG-PIVH 243
H H + + H +H +T P ++HA+ TH P I HA P H
Sbjct: 117 HPHIPHASTPTTHPHITHASTPTTHPHITHASTPTTH--PHITHASTPTTH 165
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 94 HGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHA 228
H H + + H +H +T P ++HA+ TH P I HA
Sbjct: 129 HPHITHASTPTTHPHITHASTPTTHPHITHASTPTTH--PHIAHA 171
>SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = -3
Query: 174 YWGIMCRCLMRRLVMANDALGRHSMAVALVYNTTLANSQNRADYSNFEEH 25
Y G+MC + + +D RH M + L+ ++ ++R D N +
Sbjct: 187 YIGVMCDRCSHKAIRKSDRENRHDMELPLLLPPRNSSKRSRHDNKNITHY 236
>SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)
Length = 829
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 297 SVGLLAKHVYTKNVHGSGVNNR 232
SVGL+A+ VY K + +GVN R
Sbjct: 306 SVGLIAQFVYKKPDNSAGVNRR 327
>SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06)
Length = 1176
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 444 GTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 301
GT + RCG P + ++ ++E R R+ + + Q G HV G
Sbjct: 703 GTSNDRCGTPHKELQ--DAKECGSRSKRARNARRQKQSGNSSSHVTTG 748
>SB_32118| Best HMM Match : PPC (HMM E-Value=0.39)
Length = 277
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 129 ANDALGRHSMAVALVYNTTLANSQNRADYSNFEE 28
AN L +++M V + Y T +A +NR YS EE
Sbjct: 112 ANSPLSKYTMTVVVDYGTGMAEDKNRW-YSASEE 144
>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
Length = 996
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 85 DEGHGHAVSSQSI-VRHDEPSHQATAHYTPVLSHAAPVLTHA 207
+E H A+ + I ++H T Y P + AAPVL +A
Sbjct: 262 EETHETAIKGEKIKLKHKTKVSNNTLKYFPFMYRAAPVLKYA 303
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 26.6 bits (56), Expect = 9.7
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +2
Query: 200 LTQPL*FNMPVLLFTPLP----*TFFVYTCFASSPTLQPCATCS 319
++QPL P LFTPLP T YT + PT P A+ S
Sbjct: 1200 VSQPLFITTPGALFTPLPHETSATSPPYTSASPVPTTTPSASSS 1243
>SB_11408| Best HMM Match : zf-C2H2 (HMM E-Value=0.072)
Length = 54
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 450 RVGTCDRRCGDPRRNMRTHTSRE 382
R G C RR D R++RTHT +
Sbjct: 16 RCGECFRRTKDLTRHLRTHTGEK 38
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,909,818
Number of Sequences: 59808
Number of extensions: 351146
Number of successful extensions: 3242
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 2853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3200
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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