Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30420
(455 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 35 0.032
AL117204-37|CAB55148.2| 248|Caenorhabditis elegans Hypothetical... 32 0.17
AF106579-5|AAC78198.1| 174|Caenorhabditis elegans Hypothetical ... 31 0.40
U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related... 29 1.6
Z74037-5|CAA98493.3| 509|Caenorhabditis elegans Hypothetical pr... 29 2.1
AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical... 29 2.1
AB044562-1|BAA96734.1| 509|Caenorhabditis elegans MIG-17 protein. 29 2.1
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 28 2.8
Z81464-7|CAB03857.2| 338|Caenorhabditis elegans Hypothetical pr... 27 4.9
U80844-4|AAB37974.1| 192|Caenorhabditis elegans Hypothetical pr... 27 6.5
AL132943-4|CAB81975.1| 690|Caenorhabditis elegans Hypothetical ... 27 6.5
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 27 8.6
U28739-11|AAR25657.1| 487|Caenorhabditis elegans Hypothetical p... 27 8.6
U28739-10|AAR25656.1| 683|Caenorhabditis elegans Hypothetical p... 27 8.6
AC024751-5|AAK21514.2| 220|Caenorhabditis elegans Hypothetical ... 27 8.6
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 34.7 bits (76), Expect = 0.032
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Frame = +3
Query: 291 QHFSPVQHAPVVHHAAI--PIAVEHSDHVE--DHAPA--KYEF--SYSVEDPHTGDHKSQ 446
+H + +PV + ++ P A EH +H E H+PA + EF S SV PH +H
Sbjct: 710 EHIEEARQSPVTNQESVHSPHASEHFEHREVVPHSPAASQEEFGRSPSVHSPHVSEHFEH 769
Query: 447 HE 452
HE
Sbjct: 770 HE 771
>AL117204-37|CAB55148.2| 248|Caenorhabditis elegans Hypothetical
protein Y116A8C.10b protein.
Length = 248
Score = 32.3 bits (70), Expect = 0.17
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 208 APLIQHAGPIVH-AAPVNILRIYMLRQ*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIML 384
A L+ H GP+ + ++ L+I +LR +N+ L SC + N+ S
Sbjct: 153 ADLVPHKGPVSYDRLHIDSLKI-ILRGSANSITLSRFFDSCLDRTRRTSLNSSSSSFFTK 211
Query: 385 PRSMSSHIPSRIPTPAITSPN 447
PRSM+ ++P + A + N
Sbjct: 212 PRSMTPNLPGASASAAAAAAN 232
>AF106579-5|AAC78198.1| 174|Caenorhabditis elegans Hypothetical
protein F54E2.2 protein.
Length = 174
Score = 31.1 bits (67), Expect = 0.40
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 334 AWCTTGACCTGLKCWTTGEACIYEEC 257
+WCTT C G KC TG C Y C
Sbjct: 150 SWCTTDQDCKGKKCCPTG--CDYNVC 173
>U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related
family protein 2 protein.
Length = 933
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 449 VLGLVIAGVGILDGI*ELILRGSMIFDMIGV 357
+LG+V AG+ IL G+ L L G D++GV
Sbjct: 304 ILGVVSAGIAILTGVGFLSLMGMPYNDIVGV 334
>Z74037-5|CAA98493.3| 509|Caenorhabditis elegans Hypothetical
protein F57B7.4 protein.
Length = 509
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -2
Query: 343 GIAAWCTTGACCTGLKCWTTGEACIYEECSRERREQ*DRHVESKGLRE 200
G WC G+C K W + + CS+ + + +SK RE
Sbjct: 449 GYNMWCLEGSCVQNTKKWMDCKDINSKTCSKYSTSKLKHYCKSKDFRE 496
>AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical
protein Y18H1A.9 protein.
Length = 488
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +3
Query: 117 KHRSP*RAFSSSNGTLYPSIESCCSSTDSRSPFD 218
K+RSP + + G P +CC D FD
Sbjct: 247 KNRSPPKCIQQATGLFQPPTTTCCQGVDLNRNFD 280
>AB044562-1|BAA96734.1| 509|Caenorhabditis elegans MIG-17 protein.
Length = 509
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -2
Query: 343 GIAAWCTTGACCTGLKCWTTGEACIYEECSRERREQ*DRHVESKGLRE 200
G WC G+C K W + + CS+ + + +SK RE
Sbjct: 449 GYNMWCLEGSCVQNTKKWMDCKDINSKTCSKYSTSKLKHYCKSKDFRE 496
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/60 (28%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Frame = +3
Query: 273 HASPVVQ-HFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQH 449
H SP H HAP H H H E H + + H G H S H
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHH 556
>Z81464-7|CAB03857.2| 338|Caenorhabditis elegans Hypothetical
protein C08E8.2 protein.
Length = 338
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -3
Query: 399 THTSREHDLRHDRSVRRQLESQRGARLEH--VAQG*SVGLLAKHVYTKN 259
TH+S HD RH ++ LE Q R+ H ++ G +V +LAK++Y N
Sbjct: 139 THSSIRHDCRHFFNL--VLEHQGDGRILHLKISTG-TVKVLAKNLYFPN 184
>U80844-4|AAB37974.1| 192|Caenorhabditis elegans Hypothetical
protein C07D8.2 protein.
Length = 192
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 139 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVNI 261
P A P S AAP LT AAP + P+ AA ++
Sbjct: 25 PQRSPMAPAAPTSSAAAPTLTAAAPPSSASAPMSSAAAYHL 65
>AL132943-4|CAB81975.1| 690|Caenorhabditis elegans Hypothetical
protein Y116F11B.7 protein.
Length = 690
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 123 DALGRHSMAVALVYNTTLANSQNRADYSNFEE 28
+ALG + +AL+ N +LA N D+ FE+
Sbjct: 344 EALGDKILDLALILNLSLAYGSNAFDFPEFEK 375
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 172 VLSHAAPVLTHAAPLIQHAGPIVHAAP 252
VL+ AP+L APL+ P++ AAP
Sbjct: 62 VLAAPAPLLAPPAPLLAPPAPVLAAAP 88
>U28739-11|AAR25657.1| 487|Caenorhabditis elegans Hypothetical
protein C17G10.6b protein.
Length = 487
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +1
Query: 73 GGVI--DEGHGHAVSSQSIVRHDEPSHQATAHYTPVL 177
GG + DEG HAV +H P + T H P L
Sbjct: 140 GGFVAGDEGTRHAVVDSEGTKHGAPDTEGTRHDAPDL 176
>U28739-10|AAR25656.1| 683|Caenorhabditis elegans Hypothetical
protein C17G10.6a protein.
Length = 683
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +1
Query: 73 GGVI--DEGHGHAVSSQSIVRHDEPSHQATAHYTPVL 177
GG + DEG HAV +H P + T H P L
Sbjct: 191 GGFVAGDEGTRHAVVDSEGTKHGAPDTEGTRHDAPDL 227
>AC024751-5|AAK21514.2| 220|Caenorhabditis elegans Hypothetical
protein Y18H1A.4 protein.
Length = 220
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 372 EDHAPAKYEFSYSVEDPHTGDHKS 443
E+ AP KY +YS + H D K+
Sbjct: 193 EETAPGKYRHNYSSDSSHLSDKKN 216
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,427,056
Number of Sequences: 27780
Number of extensions: 250486
Number of successful extensions: 913
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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