Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30420
         (455 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.29 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   1.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.6  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   3.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = +1

Query: 91  GHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 252
           GHGH  S      H   SH AT H+     H+ P+   + P     G   H  P
Sbjct: 420 GHGH--SHIHATPHHHHSHAATPHH----QHSTPLAHSSYPAAIQIGHTPHHHP 467


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 134 SWRTMLWEDTAWPWPSS 84
           SW T++W D+   W  S
Sbjct: 93  SWMTLMWTDSHLSWKPS 109


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 363 DHVEDHAPAKYEFSYSVEDP 422
           DH  DHAP + E  + V DP
Sbjct: 340 DH-GDHAPKQTEVRFKVHDP 358


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 363 DHVEDHAPAKYEFSYSVEDP 422
           DH  DHAP + E  + V DP
Sbjct: 340 DH-GDHAPKQTEVRFKVHDP 358


>AF023666-1|AAC14552.1|  363|Apis mellifera
          sn-glycerol-3-phosphate dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 57 NRADYSNFEEHVEM 16
          N A++SNFE+ V M
Sbjct: 26 NAANFSNFEDRVTM 39


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 3   RFSKASQHVLQNCCSLLDFGYLP 71
           +FS     VL     +LD G+LP
Sbjct: 344 KFSSVQFLVLDEADRMLDMGFLP 366


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 115 QSIVRHDEPSHQATA 159
           Q  VR+D+ S QATA
Sbjct: 369 QCFVRNDQESAQATA 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,221
Number of Sequences: 438
Number of extensions: 3425
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)