Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30420
         (455 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t...    36   0.017
At3g44700.1 68416.m04807 expressed protein contains Pfam profile...    29   1.5  
At1g30420.1 68414.m03718 ATP-binding cassette transport protein,...    28   2.6  
At5g31873.1 68418.m03777 hypothetical protein                          28   3.4  
At5g28120.1 68418.m03396 hypothetical protein                          28   3.4  
At5g28110.1 68418.m03395 hypothetical protein                          28   3.4  
At3g30816.1 68416.m03949 hypothetical protein                          28   3.4  
At1g30410.1 68414.m03717 ATP-binding cassette transport protein,...    27   4.5  
At4g35870.1 68417.m05094 expressed protein                             27   6.0  
At5g52730.1 68418.m06545 heavy-metal-associated domain-containin...    27   7.9  
At3g53140.1 68416.m05856 O-diphenol-O-methyl transferase, putati...    27   7.9  
At3g13250.1 68416.m01668 hypothetical protein low similarity to ...    27   7.9  
At3g11290.1 68416.m01373 expressed protein                             27   7.9  
At1g20760.1 68414.m02600 calcium-binding EF hand family protein ...    27   7.9  
At1g07270.1 68414.m00773 cell division control protein CDC6b, pu...    27   7.9  

>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein low similarity to
           glucoamylase S1/S2 [Precursor] from Saccharomyces
           cerevisiae [SP|P08640], proteophosphoglycan from
           Leishmania major [GI:5420387]; contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 256

 Score = 35.5 bits (78), Expect = 0.017
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +1

Query: 124 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAA 249
           VRH  P     +H +P +SH++P  + ++P + H+ P+V A+
Sbjct: 165 VRHSSPP---VSHSSPPVSHSSPPTSRSSPAVSHSSPVVAAS 203


>At3g44700.1 68416.m04807 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function; expression
           supported by MPSS
          Length = 368

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 253 RERREQ*DRHVESKGLRESVLEQHDSILGYNVPLLDEKARHGERC 119
           RE  ++ +   ++ G+   V + HD I G +VP L +K+  GE+C
Sbjct: 4   REEAKRANNDEDNGGIDIVVEKSHDLISGGSVPKLLKKSAGGEKC 48


>At1g30420.1 68414.m03718 ATP-binding cassette transport protein,
           putative contains Pfam profiles PF00005: ABC
           transporter, PF00664: ABC transporter transmembrane
           region
          Length = 1488

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 134 SWRTMLWEDTAWPWPSSITPPWQIAKIEQTTAILKNMLRCLTE 6
           SW T L +   +  P +    WQ+ + +QT  ++K   RC TE
Sbjct: 241 SWMTPLMQ-LGYRKPITERDVWQLDQWDQTETLIKRFQRCWTE 282


>At5g31873.1 68418.m03777 hypothetical protein 
          Length = 271

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 432 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 301
           +R  DPR N+R    R H L +D  V    +   G+ + HVA G
Sbjct: 196 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 238


>At5g28120.1 68418.m03396 hypothetical protein
          Length = 506

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 432 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 301
           +R  DPR N+R    R H L +D  V    +   G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436


>At5g28110.1 68418.m03395 hypothetical protein
          Length = 493

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 432 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 301
           +R  DPR N+R    R H L +D  V    +   G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436


>At3g30816.1 68416.m03949 hypothetical protein
          Length = 342

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 432 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 301
           +R  DPR N+R    R H L +D  V    +   G+ + HVA G
Sbjct: 231 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 273


>At1g30410.1 68414.m03717 ATP-binding cassette transport protein,
           putative similar to MgATP-energized glutathione
           S-conjugate pump [Arabidopsis thaliana] GI:2909781;
           contains Pfam profiles PF00005: ABC transporter,
           PF00664: ABC transporter transmembrane region
          Length = 1495

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 71  WQIAKIEQTTAILKNMLRCLTE 6
           WQ+ K +QT  ++K   RC TE
Sbjct: 261 WQLDKWDQTETLIKRFQRCWTE 282


>At4g35870.1 68417.m05094 expressed protein
          Length = 817

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 384 EHDLRHDRSVRRQLESQRGARLEHVAQG*SVG-LLAKHVYTKN 259
           +  LR  + +R  LESQ  A  E  AQG  V  ++ K VYT N
Sbjct: 312 DEKLRKLQELRADLESQLAAYKEGRAQGAGVAFVMFKDVYTAN 354


>At5g52730.1 68418.m06545 heavy-metal-associated domain-containing
           protein  contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 185

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 112 SQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGP 234
           ++S V   EPS +   +  P+    +   TH+ P I HA P
Sbjct: 131 NRSRVTRREPSREPEPNRAPLARRESRPRTHSRPSIPHARP 171


>At3g53140.1 68416.m05856 O-diphenol-O-methyl transferase, putative
           similar to GI:6688808 [Medicago sativa subsp. x varia],
           caffeic acid O-methyltransferase (homt1), Populus
           kitakamiensis, EMBL:PKHOMT1A
          Length = 359

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 175 LSHAAPVLTHAAPLIQHAGPIVHAAPV 255
           LS+AA VL H    +  A P+VH A V
Sbjct: 115 LSYAAYVLQHHQEALMRAWPLVHTAVV 141


>At3g13250.1 68416.m01668 hypothetical protein low similarity to
           SP|P07271 DNA repair and recombination protein PIF1,
           mitochondrial precursor {Saccharomyces cerevisiae}
          Length = 1419

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 150 LMRRLVMANDALGRHSMAVALVYNTTLA 67
           L+++L+  NDAL RH      +YN   A
Sbjct: 38  LIKKLLKGNDALSRHYRQFIRIYNMIFA 65


>At3g11290.1 68416.m01373 expressed protein
          Length = 460

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 234 RTGMLNQRGCVSQYWSSMTQYWGIMCR 154
           RTG    R  +  +W +M + W I CR
Sbjct: 41  RTGARFTRNQLKNHWDTMIKQWKIWCR 67


>At1g20760.1 68414.m02600 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 1019

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 355 NTPIMSKIMLPRSMSSHIPSRIPTPAITS 441
           NTP  +KI  P+   S IP+  P PA T+
Sbjct: 91  NTPAAAKIPPPKINLSAIPAPRPNPAATT 119


>At1g07270.1 68414.m00773 cell division control protein CDC6b,
           putative (CDC6b) identical to CDC6b protein
           (GI:18056482) {Arabidopsis thaliana}; contains Prosite
           PS00017: ATP/GTP-binding site motif A (P-loop);
           identical to cDNA CDC6b GI:18056481
          Length = 505

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 370 SKIMLPRSMSSHIPSRIPTPAIT 438
           + +  P+ + SH+PS +P P ++
Sbjct: 50  NSVSTPKKLKSHLPSSVPNPGMS 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,769,888
Number of Sequences: 28952
Number of extensions: 229999
Number of successful extensions: 791
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)