Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30419
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      126   1e-29
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    33   0.25 
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   3.1  
04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771...    29   3.1  
03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,772...    29   3.1  
05_03_0555 + 15425486-15426856                                         29   5.4  
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443...    29   5.4  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    29   5.4  
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777...    28   9.5  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  126 bits (305), Expect = 1e-29
 Identities = 53/83 (63%), Positives = 70/83 (84%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 443
           +YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +GDRG  ARASG++A VI HNP
Sbjct: 82  MYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNP 141

Query: 444 DAKRTRVKLPSGAKKVLPSSNRA 512
           D   +R+KLPSGAKK++PSS RA
Sbjct: 142 DNGTSRIKLPSGAKKIVPSSCRA 164



 Score =  122 bits (295), Expect = 2e-28
 Identities = 55/83 (66%), Positives = 67/83 (80%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGFVKDIIHDPGRGAPLAV 202
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KG V DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
           V FR P+++K +KELF+  + ++
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMY 83



 Score =  118 bits (285), Expect = 4e-27
 Identities = 49/60 (81%), Positives = 54/60 (90%)
 Frame = +2

Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 685
           + M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHA 222


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 529 WRWTY*QTYFESWKGIPQVQG 591
           W WTY  T+F SW  +P +QG
Sbjct: 70  WSWTYWSTFFLSWSIVPTLQG 90


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +2

Query: 407 LWKLRHCDWT 436
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>04_04_1580 -
           34576595-34576723,34576905-34576981,34577058-34577104,
           34577864-34577964,34578114-34578203,34578647-34578763,
           34578835-34578992,34579562-34579843,34580367-34580667
          Length = 433

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 543 IRPPPATIPTMPCCLMAEPSWLQTVALLLYA*HQDCVQSQWRSFQRHVPDD 391
           I  P +T+P  PC  +   + + T A+L    H   +Q    +FQ  VP +
Sbjct: 60  IHHPSSTMPVAPCSYVPRYTMVPTSAMLPLQHHHRQLQISQENFQDRVPSN 110


>03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,
            7724751-7725072,7725183-7725661,7726157-7726430,
            7726598-7726884,7726966-7727388,7727545-7727890,
            7728011-7728328,7729817-7731081
          Length = 1803

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 766  SRNPFRSCEQQLGPILRPADVPLLTVESLTYMLMVT 659
            S N  RS  Q+LG + +  D PLL +E+ +Y L +T
Sbjct: 1638 SDNDLRSKLQELGSMTQMQDPPLLRLENESYQLCLT 1673


>05_03_0555 + 15425486-15426856
          Length = 456

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 461 SKATVWSQEGSAIKQQGMVGIVAGGGRIDKPILKAGRAYHKYKVKRN 601
           SK TV  +EG  +K +G      G   ID  I +   ++H  ++K+N
Sbjct: 369 SKLTVKKKEGGVLKMEGASEGRKGVLAIDAEIFEVTPSFHLVEIKKN 415


>02_05_0812 +
           31942591-31942758,31943415-31943491,31944169-31944327,
           31944559-31944772,31944849-31944935,31945022-31945161,
           31945380-31945460,31945948-31946012,31946219-31946394,
           31947212-31947342,31947438-31947525,31947671-31947884,
           31948206-31948312,31948456-31948953
          Length = 734

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 529 WRWTY*QTYFESWKGIPQVQG 591
           W W+Y  T+  +W  +P +QG
Sbjct: 70  WSWSYWSTFILTWAVVPTIQG 90


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 438 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 349
           C    W++   H+P  L H  +  +C  WY
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102


>11_06_0325 +
           22376195-22377001,22377136-22377525,22377638-22377778,
           22377888-22378067,22378268-22378447,22378536-22378637,
           22378768-22378896,22379318-22379422,22379528-22379623
          Length = 709

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +3

Query: 369 EEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRAWSVLLLEVDVLT 548
           EEK+ +   L    G    +IG N   K T +KL  G +K      +   VLL E +VL 
Sbjct: 445 EEKLFNNANLIVERGEKIAIIGPNGCGKSTLLKLILGMEK-----TQGGEVLLGEHNVLP 499

Query: 549 NLF 557
           N F
Sbjct: 500 NYF 502


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,325,713
Number of Sequences: 37544
Number of extensions: 576108
Number of successful extensions: 1633
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)