Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30419
(777 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 4e-34
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 142 4e-34
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 38 0.009
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 30 1.8
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 30 2.4
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2) 29 3.2
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_7898| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_3269| Best HMM Match : 5_nucleotid (HMM E-Value=0) 28 7.3
SB_57867| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 142 bits (343), Expect = 4e-34
Identities = 62/83 (74%), Positives = 73/83 (87%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 443
+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN
Sbjct: 82 MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNV 141
Query: 444 DAKRTRVKLPSGAKKVLPSSNRA 512
+ KRTRVKLPSG KKV+PSSNRA
Sbjct: 142 EKKRTRVKLPSGIKKVIPSSNRA 164
Score = 137 bits (332), Expect = 8e-33
Identities = 62/83 (74%), Positives = 70/83 (84%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGFVKDIIHDPGRGAPLAV 202
MGRVIR QRKGAGS+F SHTK RKGA LR DYAERHGYIKG VK+IIHDPGRGAPLAV
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60
Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
V FRDPY++K RKELF+ + ++
Sbjct: 61 VVFRDPYRYKLRKELFVATEGMY 83
Score = 124 bits (300), Expect = 6e-29
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = +2
Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIG 679
+ +VGIVAGGGRIDKP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG
Sbjct: 163 RALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNHQHIG 220
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 142 bits (343), Expect = 4e-34
Identities = 62/83 (74%), Positives = 73/83 (87%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 443
+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN
Sbjct: 40 MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNV 99
Query: 444 DAKRTRVKLPSGAKKVLPSSNRA 512
+ KRTRVKLPSG KKV+PSSNRA
Sbjct: 100 EKKRTRVKLPSGIKKVIPSSNRA 122
Score = 67.7 bits (158), Expect = 1e-11
Identities = 28/41 (68%), Positives = 35/41 (85%)
Frame = +2
Query: 149 GFVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIVPKALH 271
G VK+IIHDPGRGAPLAVV FRDPY++K RKELF+ + ++
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMY 41
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 37.9 bits (84), Expect = 0.009
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +3
Query: 300 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSG 479
A L+ G+ P+ +P GT+V N+E G +LARA+G A +I + V+LPS
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167
Query: 480 AKKVLPS 500
+K + S
Sbjct: 168 VEKEVSS 174
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 595 FDLVLVVCPSSFQNRFVNT--STSSNNTDHALLLDGRTFLAPDGSFT 461
F L V PSS QN F + + ++ T L+LD TFL PDGS T
Sbjct: 114 FSLNCDVIPSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159
>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
Length = 565
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 193 FGCCTLPRSIQVQDKEGALHCPEGS 267
FGCC +P ++ QDK CP GS
Sbjct: 182 FGCCVMPNAVHCQDKWHC--CPMGS 204
>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 342 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRAWS 518
P G I+ + +GD+ R +GN T A + +PS L + +RAWS
Sbjct: 218 PNGRILPEIPNHVGDKHEKKR-NGNAKTNEADRIGADSSSTAIPSSCTSTLSNHSRAWS 275
>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
Length = 466
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 342 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRAWS 518
P G I+ + +GD+ R +GN T A + +PS L + +RAWS
Sbjct: 332 PNGRILPEIPNHVGDKHEKKR-NGNAKTNEADRIGADSSSTAIPSSCTSTLSNHSRAWS 389
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 29.1 bits (62), Expect = 4.2
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Frame = -3
Query: 376 FSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*S-----LRDNE--ELLPCLELVW 218
F+S L T +P+ P G+TF T +V F +NW + + D E +L LE +W
Sbjct: 1067 FNSELVTSLPT---PPGLTFTTYKVVFLE--SNWRIGNTSGRVATDKELVRVLSSLEYLW 1121
Query: 217 IAEVYNSQRCTS--TRVMDY---ILNKSLDVSMTFSV 122
I + + S TR+MD I NKS F+V
Sbjct: 1122 IRGRWTNLTDPSLKTRLMDITMTIANKSSIGDTVFNV 1158
>SB_7898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 681 RLSTVKRGTSAGRKIGPNC-CSQDRKGFLEGK 773
RLS V +GT + P+C C + G +EGK
Sbjct: 380 RLSIVAKGTKVVKNDSPHCACHKKNSGIMEGK 411
>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 455 TLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 282
T SI ++ + + + GTC+ + FK+ H + H + H ++N C + ++
Sbjct: 76 THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135
Query: 281 KLACV 267
CV
Sbjct: 136 NQRCV 140
>SB_3269| Best HMM Match : 5_nucleotid (HMM E-Value=0)
Length = 403
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 776 GLALQKSFPVLRAAIRPNFATSRCSSLDSGKPYLYVD-GYHHREDALQGSWQ 624
G+ L+KS P+LR + A+ R + L + PY +VD G H + G WQ
Sbjct: 204 GMYLEKS-PLLREMLNKIRASGRKTFLITNSPYTFVDRGMDH---MVGGGWQ 251
>SB_57867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 890
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 548 KPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKAFH 691
+P L + + K+ K CW YV M E G G + H+G H
Sbjct: 465 RPKLSSDYHFVKFVFKSGCWSYVGRTGMVEQELSIGSGCN-HLGTILH 511
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,333,442
Number of Sequences: 59808
Number of extensions: 632384
Number of successful extensions: 1738
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1736
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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