Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30419
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   133   2e-31
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    36   0.032
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    31   0.92 
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AC084154-12|AAK29876.1| 1137|Caenorhabditis elegans Hypothetical...    28   8.6  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  133 bits (321), Expect = 2e-31
 Identities = 54/83 (65%), Positives = 72/83 (86%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 443
           ++TGQF++CG KA +++GN++PVG +PEGT +CN+E K GDRG +ARASGN+ATVI HNP
Sbjct: 82  MHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNP 141

Query: 444 DAKRTRVKLPSGAKKVLPSSNRA 512
           D K+TR++LPSGAKKV+ S NRA
Sbjct: 142 DTKKTRIRLPSGAKKVVQSVNRA 164



 Score =  132 bits (319), Expect = 3e-31
 Identities = 59/83 (71%), Positives = 66/83 (79%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGFVKDIIHDPGRGAPLAV 202
           MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG VKDIIHDPGRGAPLA+
Sbjct: 1   MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60

Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
           + FRDPYK+KT K   +  + +H
Sbjct: 61  IAFRDPYKYKTVKTTVVAAEGMH 83



 Score =  118 bits (283), Expect = 6e-27
 Identities = 48/58 (82%), Positives = 53/58 (91%)
 Frame = +2

Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIG 679
           + M+G+VAGGGR DKP+LKAGR+YHKYK KRN WP VRGVAMNPVEHPHGGGNHQHIG
Sbjct: 163 RAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIG 220


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 315 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 473
           GN  P+G++  GT++ ++E     D     +A+G  AT++ H  D   T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +3

Query: 429 IGHNPDAKRTRVKLPSGAKKVLPSSNRAWSVLLLE 533
           IGH  D +RTR  LP+G KKVL  + +   +LL++
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVLVQNVKDLDMLLMQ 90


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 133
           +GR  R+ +KG    F +HT   K    L+ LD A++
Sbjct: 464 IGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500


>AC084154-12|AAK29876.1| 1137|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.12 protein.
          Length = 1137

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -3

Query: 304 VAFFPQ*TNWPV*SLRDNEELLPCL--ELVWIAEVYNSQRCTSTRVMDYILNKSLDVSMT 131
           +  F + TN P+ S++   E +P +  +LV + E    +   S R    +LN+  D S  
Sbjct: 498 IQHFRESTNMPL-SIKSTAEAIPKIKTQLVDLKEYIEGKDIKSKRAAVNVLNELKDASSQ 556

Query: 130 FSVI 119
           FSV+
Sbjct: 557 FSVL 560


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,756,374
Number of Sequences: 27780
Number of extensions: 458607
Number of successful extensions: 1161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)