Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30417
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   106   2e-24
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   106   2e-24
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   2.6  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   3.4  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   6.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   6.0  
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.0  

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  106 bits (254), Expect = 2e-24
 Identities = 47/85 (55%), Positives = 60/85 (70%)
 Frame = +1

Query: 10  PEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPS 189
           P+ +D+VKT   KELAPYDPDW+YVR AAI RHIY+R  VGV  + K++GG    G+ PS
Sbjct: 31  PQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPS 90

Query: 190 HFCRSSGSIARKALQSLEALKLLRK 264
           H    SGS+ RK +QSLE + +L K
Sbjct: 91  HHRDGSGSVQRKVVQSLEKIGVLEK 115



 Score = 32.3 bits (70), Expect = 0.030
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +3

Query: 246 IEAVEKVQDGGRILTTQGRRDLDRI 320
           I  +EK  +GGR ++ QG+RDLDRI
Sbjct: 110 IGVLEKSDNGGRRISQQGQRDLDRI 134


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  106 bits (254), Expect = 2e-24
 Identities = 47/85 (55%), Positives = 60/85 (70%)
 Frame = +1

Query: 10  PEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPS 189
           P+ +D+VKT   KELAPYDPDW+YVR AAI RHIY+R  VGV  + K++GG    G+ PS
Sbjct: 31  PQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPS 90

Query: 190 HFCRSSGSIARKALQSLEALKLLRK 264
           H    SGS+ RK +QSLE + +L K
Sbjct: 91  HHRDGSGSVQRKVVQSLEKIGVLEK 115



 Score = 32.3 bits (70), Expect = 0.030
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +3

Query: 246 IEAVEKVQDGGRILTTQGRRDLDRI 320
           I  +EK  +GGR ++ QG+RDLDRI
Sbjct: 110 IGVLEKSDNGGRRISQQGQRDLDRI 134


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 159 TKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQL 49
           ++D+G +L+ N+ +N+  TK+ S   I+       QL
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQL 145


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 35  QLASKSWLRMTLIGSMCVVL 94
           +L SKSWL +  +G +C+ L
Sbjct: 359 KLLSKSWLSLEPVGQICISL 378


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 83  CVVLPSFVIFTFAHLLESRL 142
           C+V  S V+F  AH+ E RL
Sbjct: 176 CIVSSSLVLFDNAHVTEGRL 195


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 105  SYLHSLTCWSQDCHQDLWW 161
            S+ + +T + Q CH++LW+
Sbjct: 1149 SFQNLVTVFCQSCHKELWY 1167


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 263 FLNSFNASNDCKALRAI-LPDDLQKCE 186
           FLNSFNAS D  A + I L +  +K E
Sbjct: 77  FLNSFNASGDLTANKKIQLREQSRKLE 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,609,302
Number of Sequences: 5004
Number of extensions: 29223
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)