Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30417
(407 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220... 114 2e-26
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 29 1.9
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 29 1.9
11_01_0645 + 5185341-5185568,5185773-5185823 27 4.3
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 27 4.3
12_01_0035 - 295988-296408,296645-296813,296929-296965,297097-29... 27 5.7
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26... 27 5.7
01_01_0218 + 1856104-1856700,1856814-1857452 27 5.7
11_06_0715 + 26552962-26553510,26553578-26555746 27 7.6
04_04_0918 - 29411239-29411373,29412276-29412526,29412772-294130... 27 7.6
03_02_0044 - 5245204-5245538,5245946-5246093,5246182-5247395,524... 27 7.6
>03_04_0129 +
17520753-17520842,17521651-17521741,17521887-17522070,
17522149-17522224
Length = 146
Score = 114 bits (275), Expect = 2e-26
Identities = 48/86 (55%), Positives = 66/86 (76%)
Frame = +1
Query: 1 VKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGV 180
+++PE +D+VKTARFKEL PYDPDW+Y R A+I R IY+R +GV KI+GGR+RNG
Sbjct: 31 MELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGS 90
Query: 181 TPSHFCRSSGSIARKALQSLEALKLL 258
P HFC+SSG+I+R LQ L+ + ++
Sbjct: 91 RPPHFCKSSGAISRNILQQLQKMGII 116
Score = 31.5 bits (68), Expect = 0.27
Identities = 11/16 (68%), Positives = 16/16 (100%)
Frame = +3
Query: 273 GGRILTTQGRRDLDRI 320
GGR++T+QGRRDLD++
Sbjct: 122 GGRLITSQGRRDLDQV 137
>05_07_0173 +
28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 100 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRS---SGSIARKALQSLEALKLLRKFR 270
LRH K + G + +GVT + C+S G+ +QSL++ KL+ +
Sbjct: 107 LRHSKSEMSAVQKKALQRVGASRTSGVTQNDLCKSFGMEGNNFHYIVQSLQSQKLIVRRS 166
Query: 271 TVVAF 285
T++ F
Sbjct: 167 TIIKF 171
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -2
Query: 328 WAAILSRSRLPCVVRMRPPS*TFSTASMPPTIAKPCVQYCLMTCRNV 188
W A+L+R + V+ PP F + ++P + C YC++ NV
Sbjct: 197 WEALLARPTVQKVMAGMPPDFGFGSGNIPYLLGYRC--YCVVDVENV 241
>11_01_0645 + 5185341-5185568,5185773-5185823
Length = 92
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 109 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 225
++ +SP + + + GR+R G P R +G IA +
Sbjct: 18 VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 163 AHQRSW*QS*LQQVSECKYDEGWQHNAHRTNQGHTEPAL*SELSLQDPCAQV 8
A QR Q L VS EGWQH++ + L E+ ++ AQV
Sbjct: 671 ADQRVSAQCSLAPVSHLHQQEGWQHSSFEHQHHENQNFLEMEVRVRSEMAQV 722
>12_01_0035 -
295988-296408,296645-296813,296929-296965,297097-297173,
297391-297631
Length = 314
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 182 HLHISAGHQAVLHARLCNRWRH*SC 256
H HI+AG +L +R+ N W C
Sbjct: 161 HRHITAGSGTILQSRVANAWSPWRC 185
>08_01_0036 -
267236-268165,268255-268299,268485-268574,269485-269805,
269895-270098,271532-271664,271810-271881,273106-273168,
273252-275034,275169-275217
Length = 1229
Score = 27.1 bits (57), Expect = 5.7
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 71 IGSMCVVLPSFVIFTFAHLLESRLSPRSLVGANVMELHLHISAGHQAVL 217
+G++ + LP F+ + LSPR L+ A V EL L GH A L
Sbjct: 162 LGNLVLALPGFLSLVAVRSIPQELSPR-LLWAPVFEL-LADHRGHPAFL 208
>01_01_0218 + 1856104-1856700,1856814-1857452
Length = 411
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/64 (29%), Positives = 25/64 (39%)
Frame = -2
Query: 298 PCVVRMRPPS*TFSTASMPPTIAKPCVQYCLMTCRNVKV*LHYVCAHQRSW*QS*LQQVS 119
PCV PPS T +ASMP +P L +H + + W S +VS
Sbjct: 74 PCVWPPSPPSPTDPSASMPSPTERPAAPMGLTAFLAPTSVVHTMTDEELLWRASMAPKVS 133
Query: 118 ECKY 107
Y
Sbjct: 134 RTPY 137
>11_06_0715 + 26552962-26553510,26553578-26555746
Length = 905
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 180 YTFTFLQVIRQYCTQGFAIVGGIEAVEKVQDG 275
Y FT +++R + +GF GI +E+V +G
Sbjct: 426 YLFTRKRLVRWWIAEGFVEKRGISTMEEVAEG 457
>04_04_0918 -
29411239-29411373,29412276-29412526,29412772-29413009,
29413133-29414251,29414540-29415106
Length = 769
Score = 26.6 bits (56), Expect = 7.6
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Frame = -1
Query: 293 CGENATTVLNFLNSFNASNDCKALRAILPDD---LQKCEGVTPLRL 165
C E+A+ V ++S + ++ K L+ ++ D+ L++CEG+ PLRL
Sbjct: 496 CMESASIVFCTVSSSSKISN-KKLQLLVVDEAAQLKECEGLIPLRL 540
>03_02_0044 -
5245204-5245538,5245946-5246093,5246182-5247395,
5247730-5248003,5248141-5248293
Length = 707
Score = 26.6 bits (56), Expect = 7.6
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 175 GVTPSHFCRSSGSIARKALQSLEALKLLRKFRTVVAFSP 291
GV F RSS S A K EAL+LL+ + +SP
Sbjct: 394 GVCYGPFARSSTSHAEKLRLQDEALRLLQDAAAMAKYSP 432
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,012,870
Number of Sequences: 37544
Number of extensions: 211739
Number of successful extensions: 618
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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