Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30417
         (407 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          70   6e-13
SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.48 
SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)                   30   0.84 
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_50399| Best HMM Match : EPTP (HMM E-Value=0.041)                    27   4.5  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 70.1 bits (164), Expect = 6e-13
 Identities = 39/91 (42%), Positives = 50/91 (54%)
 Frame = +1

Query: 1   VKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGV 180
           +K+P+ +DLVKT +FKELAPYDPDW+Y+R                        GRK  G 
Sbjct: 5   LKIPDWVDLVKTGKFKELAPYDPDWYYIR-----------------------AGRKNRGS 41

Query: 181 TPSHFCRSSGSIARKALQSLEALKLLRKFRT 273
            PSHF   S S+AR  L+ LE +KL+ K  T
Sbjct: 42  APSHFEVGSASVARSVLKGLEQIKLVEKAST 72



 Score = 35.9 bits (79), Expect = 0.013
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +3

Query: 246 IEAVEKVQDGGRILTTQGRRDLDRI 320
           I+ VEK   GGR +T+QG+RD+DRI
Sbjct: 64  IKLVEKASTGGRNITSQGQRDMDRI 88


>SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +1

Query: 70  DWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEAL 249
           D +YVR A +     I +  G   + +I   R+R  VTPS    S G    + L  L+ +
Sbjct: 57  DQWYVRDACVSPSENISTNYGSPKLPRIVETRQRGDVTPSPLVLSRGISRERLLTKLDRM 116

Query: 250 KLLR 261
           +L R
Sbjct: 117 QLPR 120


>SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)
          Length = 566

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 17/78 (21%), Positives = 35/78 (44%)
 Frame = +1

Query: 82  VRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLLR 261
           VR   ++    +   + V + T++  GRK++  T +H C   G++  K  + +  +   R
Sbjct: 222 VRRITVMSRTCLVRRITVMSRTRV--GRKKDHGTVTHTCEDHGNVTHKCRKGITVMSRTR 279

Query: 262 KFRTVVAFSPHKVDETLT 315
             R +   S  +V   +T
Sbjct: 280 LVRRITVMSRTRVLRRIT 297


>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1937

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/57 (28%), Positives = 22/57 (38%)
 Frame = -1

Query: 299 TLCGENATTVLNFLNSFNASNDCKALRAILPDDLQKCEGVTPLRLRPPKILVTVLTP 129
           T CG           ++N    C+       D +  C  VT   +RPP +LVT   P
Sbjct: 605 TQCGRFKCHKFAVCITYNGEKQCRCNYGYRGDGVTFCNSVTAT-VRPPSVLVTTARP 660


>SB_50399| Best HMM Match : EPTP (HMM E-Value=0.041)
          Length = 204

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 352 RLSNKSLYFNFMLIKI*N 405
           R+ NKS++FNF ++KI N
Sbjct: 48  RVENKSIFFNFQVLKIAN 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,614,622
Number of Sequences: 59808
Number of extensions: 246044
Number of successful extensions: 542
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)