Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30417
(407 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein pro... 119 4e-27
BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19 p... 119 4e-27
BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19 p... 119 4e-27
BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19 p... 119 4e-27
BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19 p... 119 4e-27
AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19 p... 119 4e-27
AB209470-1|BAD92707.1| 249|Homo sapiens proteasome beta 2 subun... 31 1.5
>M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein
protein.
Length = 145
Score = 119 bits (286), Expect = 4e-27
Identities = 52/88 (59%), Positives = 68/88 (77%)
Frame = +1
Query: 1 VKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGV 180
+KVPE +D VK A+ KELAPYD +WFY R A+ RH+Y+R GV ++TKI+GGR+RNGV
Sbjct: 28 LKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGV 87
Query: 181 TPSHFCRSSGSIARKALQSLEALKLLRK 264
PSHF R S S+AR+ LQ+LE LK++ K
Sbjct: 88 MPSHFSRGSKSVARRVLQALEGLKMVEK 115
Score = 41.9 bits (94), Expect = 8e-04
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +3
Query: 243 GIEAVEKVQDGGRILTTQGRRDLDRI 320
G++ VEK QDGGR LT QG+RDLDRI
Sbjct: 109 GLKMVEKDQDGGRKLTPQGQRDLDRI 134
>BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 119 bits (286), Expect = 4e-27
Identities = 52/88 (59%), Positives = 68/88 (77%)
Frame = +1
Query: 1 VKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGV 180
+KVPE +D VK A+ KELAPYD +WFY R A+ RH+Y+R GV ++TKI+GGR+RNGV
Sbjct: 28 LKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGV 87
Query: 181 TPSHFCRSSGSIARKALQSLEALKLLRK 264
PSHF R S S+AR+ LQ+LE LK++ K
Sbjct: 88 MPSHFSRGSKSVARRVLQALEGLKMVEK 115
Score = 41.9 bits (94), Expect = 8e-04
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +3
Query: 243 GIEAVEKVQDGGRILTTQGRRDLDRI 320
G++ VEK QDGGR LT QG+RDLDRI
Sbjct: 109 GLKMVEKDQDGGRKLTPQGQRDLDRI 134
>BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19
protein.
Length = 157
Score = 119 bits (286), Expect = 4e-27
Identities = 52/88 (59%), Positives = 68/88 (77%)
Frame = +1
Query: 1 VKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGV 180
+KVPE +D VK A+ KELAPYD +WFY R A+ RH+Y+R GV ++TKI+GGR+RNGV
Sbjct: 40 LKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGV 99
Query: 181 TPSHFCRSSGSIARKALQSLEALKLLRK 264
PSHF R S S+AR+ LQ+LE LK++ K
Sbjct: 100 MPSHFSRGSKSVARRVLQALEGLKMVEK 127
Score = 41.9 bits (94), Expect = 8e-04
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +3
Query: 243 GIEAVEKVQDGGRILTTQGRRDLDRI 320
G++ VEK QDGGR LT QG+RDLDRI
Sbjct: 121 GLKMVEKDQDGGRKLTPQGQRDLDRI 146
>BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 119 bits (286), Expect = 4e-27
Identities = 52/88 (59%), Positives = 68/88 (77%)
Frame = +1
Query: 1 VKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGV 180
+KVPE +D VK A+ KELAPYD +WFY R A+ RH+Y+R GV ++TKI+GGR+RNGV
Sbjct: 28 LKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGV 87
Query: 181 TPSHFCRSSGSIARKALQSLEALKLLRK 264
PSHF R S S+AR+ LQ+LE LK++ K
Sbjct: 88 MPSHFSRGSKSVARRVLQALEGLKMVEK 115
Score = 41.9 bits (94), Expect = 8e-04
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +3
Query: 243 GIEAVEKVQDGGRILTTQGRRDLDRI 320
G++ VEK QDGGR LT QG+RDLDRI
Sbjct: 109 GLKMVEKDQDGGRKLTPQGQRDLDRI 134
>BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 119 bits (286), Expect = 4e-27
Identities = 52/88 (59%), Positives = 68/88 (77%)
Frame = +1
Query: 1 VKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGV 180
+KVPE +D VK A+ KELAPYD +WFY R A+ RH+Y+R GV ++TKI+GGR+RNGV
Sbjct: 28 LKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGV 87
Query: 181 TPSHFCRSSGSIARKALQSLEALKLLRK 264
PSHF R S S+AR+ LQ+LE LK++ K
Sbjct: 88 MPSHFSRGSKSVARRVLQALEGLKMVEK 115
Score = 41.9 bits (94), Expect = 8e-04
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +3
Query: 243 GIEAVEKVQDGGRILTTQGRRDLDRI 320
G++ VEK QDGGR LT QG+RDLDRI
Sbjct: 109 GLKMVEKDQDGGRKLTPQGQRDLDRI 134
>AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 119 bits (286), Expect = 4e-27
Identities = 52/88 (59%), Positives = 68/88 (77%)
Frame = +1
Query: 1 VKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGV 180
+KVPE +D VK A+ KELAPYD +WFY R A+ RH+Y+R GV ++TKI+GGR+RNGV
Sbjct: 28 LKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGV 87
Query: 181 TPSHFCRSSGSIARKALQSLEALKLLRK 264
PSHF R S S+AR+ LQ+LE LK++ K
Sbjct: 88 MPSHFSRGSKSVARRVLQALEGLKMVEK 115
Score = 41.9 bits (94), Expect = 8e-04
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +3
Query: 243 GIEAVEKVQDGGRILTTQGRRDLDRI 320
G++ VEK QDGGR LT QG+RDLDRI
Sbjct: 109 GLKMVEKDQDGGRKLTPQGQRDLDRI 134
>AB209470-1|BAD92707.1| 249|Homo sapiens proteasome beta 2 subunit
variant protein.
Length = 249
Score = 31.1 bits (67), Expect = 1.5
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +1
Query: 61 YDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKAL 231
Y P R +LR P G + T + GGR+ G S CR G R+AL
Sbjct: 179 YTPTISRERAVELLRKCLEEGPGGAGSSTALGGGRRSVGQDRSSSCRRKGRGRRRAL 235
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,319,502
Number of Sequences: 237096
Number of extensions: 1232188
Number of successful extensions: 2428
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2428
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 3043111070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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