Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30417
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   104   2e-23
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   104   2e-23
AF063009-2|AAO21399.1|  438|Caenorhabditis elegans Innexin prote...    28   3.0  
AF063009-1|AAM45360.1|  454|Caenorhabditis elegans Innexin prote...    28   3.0  
Z46812-6|CAA86848.2|  546|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z46812-5|CAA86847.2|  775|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z37093-8|CAA85469.2|  546|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z37093-7|CAA85468.2|  775|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z37092-11|CAA85461.2|  334|Caenorhabditis elegans Hypothetical p...    27   6.9  
Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical p...    26   9.1  
Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical p...    26   9.1  
Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U67956-5|AAB07694.1|  724|Caenorhabditis elegans Mechanosensory ...    26   9.1  
L25312-1|AAA17404.1|  724|Caenorhabditis elegans mec-10 degeneri...    26   9.1  
AF125960-3|AAD14737.1|  446|Caenorhabditis elegans Hypothetical ...    26   9.1  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  104 bits (250), Expect = 2e-23
 Identities = 48/88 (54%), Positives = 60/88 (68%)
 Frame = +1

Query: 1   VKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGV 180
           VKVPE  DLVK    KELAP DPDWFY R A++ RH+Y R P G+    K++GG KR GV
Sbjct: 29  VKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGV 87

Query: 181 TPSHFCRSSGSIARKALQSLEALKLLRK 264
            P+HF  S+G+  RKA+Q LE +K + K
Sbjct: 88  APNHFQTSAGNCLRKAVQQLEKIKWVEK 115



 Score = 34.3 bits (75), Expect = 0.034
 Identities = 18/26 (69%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
 Frame = +3

Query: 246 IEAVEKVQDG-GRILTTQGRRDLDRI 320
           I+ VEK  DG GRIL+ QGR+DLDRI
Sbjct: 110 IKWVEKHPDGKGRILSKQGRKDLDRI 135


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  104 bits (250), Expect = 2e-23
 Identities = 48/88 (54%), Positives = 60/88 (68%)
 Frame = +1

Query: 1   VKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGV 180
           VKVPE  DLVK    KELAP DPDWFY R A++ RH+Y R P G+    K++GG KR GV
Sbjct: 29  VKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGV 87

Query: 181 TPSHFCRSSGSIARKALQSLEALKLLRK 264
            P+HF  S+G+  RKA+Q LE +K + K
Sbjct: 88  APNHFQTSAGNCLRKAVQQLEKIKWVEK 115



 Score = 34.3 bits (75), Expect = 0.034
 Identities = 18/26 (69%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
 Frame = +3

Query: 246 IEAVEKVQDG-GRILTTQGRRDLDRI 320
           I+ VEK  DG GRIL+ QGR+DLDRI
Sbjct: 110 IKWVEKHPDGKGRILSKQGRKDLDRI 135


>AF063009-2|AAO21399.1|  438|Caenorhabditis elegans Innexin protein
           19, isoform b protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 193 FCRSSGSIARKALQSLEALKLLRKFRTVVAFSPHKVDETLTESL 324
           F + + S   K LQ  E    + +  TV+AF+PH +D  +++ L
Sbjct: 324 FIQIAESSEFKKLQKFEKDATVERLYTVIAFAPHLLDTFVSDFL 367


>AF063009-1|AAM45360.1|  454|Caenorhabditis elegans Innexin protein
           19, isoform a protein.
          Length = 454

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 193 FCRSSGSIARKALQSLEALKLLRKFRTVVAFSPHKVDETLTESL 324
           F + + S   K LQ  E    + +  TV+AF+PH +D  +++ L
Sbjct: 340 FIQIAESSEFKKLQKFEKDATVERLYTVIAFAPHLLDTFVSDFL 383


>Z46812-6|CAA86848.2|  546|Caenorhabditis elegans Hypothetical
           protein ZK669.1b protein.
          Length = 546

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 153 DLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 43
           D+GD   S   + V   +DGS  H++ I++I   +++
Sbjct: 495 DMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 531


>Z46812-5|CAA86847.2|  775|Caenorhabditis elegans Hypothetical
           protein ZK669.1a protein.
          Length = 775

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 153 DLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 43
           D+GD   S   + V   +DGS  H++ I++I   +++
Sbjct: 724 DMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 760


>Z37093-8|CAA85469.2|  546|Caenorhabditis elegans Hypothetical
           protein ZK669.1b protein.
          Length = 546

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 153 DLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 43
           D+GD   S   + V   +DGS  H++ I++I   +++
Sbjct: 495 DMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 531


>Z37093-7|CAA85468.2|  775|Caenorhabditis elegans Hypothetical
           protein ZK669.1a protein.
          Length = 775

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 153 DLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 43
           D+GD   S   + V   +DGS  H++ I++I   +++
Sbjct: 724 DMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 760


>Z37092-11|CAA85461.2|  334|Caenorhabditis elegans Hypothetical
           protein F44F4.13 protein.
          Length = 334

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 83  CVVLPSFVIFTFAHLLESRL 142
           C+ +PS +IFTF  +   RL
Sbjct: 289 CIAIPSLIIFTFRFIKNQRL 308


>Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 346 LAFRRTWAAILSRSRLPCVVRMRPPS*TFSTASMPPTIAKPCVQYCLMTC 197
           +A  + W A ++   L C +   P +    T+S P T A+P  +YC   C
Sbjct: 473 VAMNQNWRAQIN-CPLACPLNAHPST---CTSSCPSTCAEPFPEYCDQGC 518


>Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 346 LAFRRTWAAILSRSRLPCVVRMRPPS*TFSTASMPPTIAKPCVQYCLMTC 197
           +A  + W A ++   L C +   P +    T+S P T A+P  +YC   C
Sbjct: 485 VAMNQNWRAQIN-CPLACPLNAHPST---CTSSCPSTCAEPFPEYCDQGC 530


>Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 346 LAFRRTWAAILSRSRLPCVVRMRPPS*TFSTASMPPTIAKPCVQYCLMTC 197
           +A  + W A ++   L C +   P +    T+S P T A+P  +YC   C
Sbjct: 473 VAMNQNWRAQIN-CPLACPLNAHPST---CTSSCPSTCAEPFPEYCDQGC 518


>Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 346 LAFRRTWAAILSRSRLPCVVRMRPPS*TFSTASMPPTIAKPCVQYCLMTC 197
           +A  + W A ++   L C +   P +    T+S P T A+P  +YC   C
Sbjct: 485 VAMNQNWRAQIN-CPLACPLNAHPST---CTSSCPSTCAEPFPEYCDQGC 530


>U67956-5|AAB07694.1|  724|Caenorhabditis elegans Mechanosensory
           abnormality protein10 protein.
          Length = 724

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 376 STMTCCLACCLAFRRTWAAI 317
           S MTCC   CLAF   + AI
Sbjct: 686 SVMTCCEFVCLAFELIYMAI 705


>L25312-1|AAA17404.1|  724|Caenorhabditis elegans mec-10 degenerin
           protein.
          Length = 724

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 376 STMTCCLACCLAFRRTWAAI 317
           S MTCC   CLAF   + AI
Sbjct: 686 SVMTCCEFVCLAFELIYMAI 705


>AF125960-3|AAD14737.1|  446|Caenorhabditis elegans Hypothetical
           protein T12B3.1 protein.
          Length = 446

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 175 GVTPSHFCRSSGSIARKALQSLEALKLLRKFRTVV 279
           G++PS    +  S   KA+QS E +K L +FR ++
Sbjct: 197 GMSPSQAVDTVRSRRAKAVQSKEQVKTLHEFRLLI 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,163,157
Number of Sequences: 27780
Number of extensions: 175185
Number of successful extensions: 469
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)