Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30417
(407 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 109 5e-25
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 109 9e-25
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 106 5e-24
At5g46540.1 68418.m05730 ABC transporter family protein contains... 28 2.8
At1g78980.1 68414.m09209 leucine-rich repeat transmembrane prote... 27 4.8
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote... 27 6.4
At5g67370.1 68418.m08495 expressed protein similar to unknown pr... 26 8.5
At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00... 26 8.5
>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
RIBOSOMAL PROTEIN S19 - Oryza sativa,
SWISSPROT:RS19_ORYSA
Length = 143
Score = 109 bits (263), Expect = 5e-25
Identities = 46/86 (53%), Positives = 62/86 (72%)
Frame = +1
Query: 1 VKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGV 180
+++P D+VKT R KELAPYDPDW+Y+R A++ R IY+R +GV +I+GG KRNG
Sbjct: 29 IELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGS 88
Query: 181 TPSHFCRSSGSIARKALQSLEALKLL 258
P HFC+SSG IAR LQ LE + ++
Sbjct: 89 RPPHFCKSSGGIARHILQQLETMSIV 114
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 255 VEKVQDGGRILTTQGRRDLDRI 320
VE GGR +T+ G+RDLD++
Sbjct: 114 VELDTKGGRRITSSGQRDLDQV 135
>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
Length = 143
Score = 109 bits (261), Expect = 9e-25
Identities = 44/86 (51%), Positives = 62/86 (72%)
Frame = +1
Query: 1 VKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGV 180
+++P D+VKT + KELAPYDPDW+Y+R A++ R +Y+R +GV +I+GG KRNG
Sbjct: 29 IELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGS 88
Query: 181 TPSHFCRSSGSIARKALQSLEALKLL 258
P HFC+SSG IAR LQ LE + ++
Sbjct: 89 RPPHFCKSSGGIARHILQQLETMNIV 114
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 255 VEKVQDGGRILTTQGRRDLDRI 320
VE GGR +T+ G+RDLD++
Sbjct: 114 VELDTKGGRRITSSGQRDLDQV 135
>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
Length = 143
Score = 106 bits (255), Expect = 5e-24
Identities = 42/86 (48%), Positives = 62/86 (72%)
Frame = +1
Query: 1 VKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGV 180
+++P D+VKT + KELAPYDPDW+Y+R A++ R +Y+R +GV +I+GG KRNG
Sbjct: 29 IELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGS 88
Query: 181 TPSHFCRSSGSIARKALQSLEALKLL 258
P HFC+SSG +AR LQ L+ + ++
Sbjct: 89 RPPHFCKSSGGVARHILQQLQTMNIV 114
>At5g46540.1 68418.m05730 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter; similar to
multidrug-resistant protein CjMDR1 GI:14715462 from
[Coptis japonica]
Length = 1248
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 195 LQVIRQYCTQGFAI-VGGIEAVEKVQDGGRIL 287
+ ++ YCT GFAI G + +EK GG+++
Sbjct: 266 IMMVVVYCTYGFAIWYGARQIIEKGYTGGQVM 297
>At1g78980.1 68414.m09209 leucine-rich repeat transmembrane protein
kinase, putative similar to leucine-rich repeat
transmembrane protein kinase 2 GI:3360291 from [Zea
mays]
Length = 693
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +1
Query: 124 PVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLLRKFRTVVAFSPHKVD 303
P GVK K G + G+T +G+ + + + L+ K ++ + SPH +D
Sbjct: 250 PPGVKYGRKSSGSKDGGGITAGTGMVIAGACLGVLVLIIVLIALVSKKKS--SLSPHFID 307
Query: 304 ETLTESLPRF 333
E + P+F
Sbjct: 308 EDNSHHTPKF 317
>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
kinase, putative
Length = 666
Score = 26.6 bits (56), Expect = 6.4
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +1
Query: 34 TARFKELAPYDPDWFYVRCAAILRHIYIRS 123
T F+ ++ ++ WF C+A++ H+ + S
Sbjct: 35 TTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64
>At5g67370.1 68418.m08495 expressed protein similar to unknown
protein (gb|AAC18972.1)
Length = 327
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 56 LRMTLIGSMCVVLPSFVIFTFAHLLE 133
L+ TLIG+ +++ +FV+F FA +E
Sbjct: 221 LKQTLIGTGALLVSAFVLFVFATPVE 246
>At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00646
F-box domain
Length = 479
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 64 DPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRN-GVTPSHFCRS 204
DP W CA+ ++ ++ PV V ++T + + + G PS F S
Sbjct: 131 DPSWISTSCASRYDYVCVQLPVCVYSLTTLESLKIYSCGFDPSKFSNS 178
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,639,717
Number of Sequences: 28952
Number of extensions: 163482
Number of successful extensions: 432
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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