Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30416
(738 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 180 4e-44
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 104 2e-21
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 93 9e-18
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 79 1e-13
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 79 1e-13
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 79 1e-13
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 74 3e-12
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 72 1e-11
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 72 1e-11
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 71 3e-11
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 69 2e-10
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 69 2e-10
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 68 2e-10
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 66 1e-09
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 64 3e-09
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 63 6e-09
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 61 2e-08
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 60 7e-08
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 58 2e-07
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 56 9e-07
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 54 4e-06
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 47 6e-04
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 44 0.003
UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole ge... 40 0.064
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 40 0.064
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 40 0.064
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 40 0.064
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 40 0.084
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 39 0.11
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 38 0.19
UniRef50_A6QSD0 Cluster: Predicted protein; n=1; Ajellomyces cap... 36 1.4
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 36 1.4
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 35 1.8
UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 34 4.2
UniRef50_UPI0000F1E6DB Cluster: PREDICTED: hypothetical protein;... 33 5.5
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 5.5
UniRef50_A4JKJ0 Cluster: Diguanylate cyclase; n=1; Burkholderia ... 33 7.3
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 33 7.3
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 180 bits (437), Expect = 4e-44
Identities = 85/85 (100%), Positives = 85/85 (100%)
Frame = +2
Query: 254 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 433
GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL
Sbjct: 83 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 142
Query: 434 VGILPSGLLLVTGPFAFNSCPLRRI 508
VGILPSGLLLVTGPFAFNSCPLRRI
Sbjct: 143 VGILPSGLLLVTGPFAFNSCPLRRI 167
Score = 109 bits (262), Expect = 7e-23
Identities = 57/88 (64%), Positives = 59/88 (67%)
Frame = +1
Query: 475 FCFQFVPATPYSQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 654
F F P QRYVIGTSTRISLGNFKLPKHFNDDYF EGDDIFA
Sbjct: 157 FAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFKKNKKCVKRTVKRKEGDDIFA 216
Query: 655 TKKEKYVPSEQRKTRFRRQSTRAVIKAI 738
TKKEKYVPSEQRKT ++ AVIKAI
Sbjct: 217 TKKEKYVPSEQRKTD-QKTVDEAVIKAI 243
Score = 99.1 bits (236), Expect = 1e-19
Identities = 48/64 (75%), Positives = 48/64 (75%)
Frame = +3
Query: 81 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGEP 260
STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIG LTVVVKQIGGEKNG
Sbjct: 25 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGT 84
Query: 261 EQYP 272
P
Sbjct: 85 RTVP 88
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 104 bits (250), Expect = 2e-21
Identities = 52/85 (61%), Positives = 61/85 (71%)
Frame = +2
Query: 254 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 433
G RTV LK+ K+ YPT+ ++ FS+H R R NL GTV ILLAGRH GKRVVL
Sbjct: 75 GERTVFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVL 134
Query: 434 VGILPSGLLLVTGPFAFNSCPLRRI 508
+ +L SGLLLVTGPFA NSCPLRR+
Sbjct: 135 LKVLASGLLLVTGPFALNSCPLRRV 159
Score = 69.3 bits (162), Expect = 9e-11
Identities = 37/88 (42%), Positives = 51/88 (57%)
Frame = +1
Query: 475 FCFQFVPATPYSQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 654
F P SQRYVIGTS+++ LG FK+P+H ND YF DIFA
Sbjct: 149 FALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAKKDKKTGEA---DIFA 205
Query: 655 TKKEKYVPSEQRKTRFRRQSTRAVIKAI 738
KKE++VP+EQRK + +++ A++K I
Sbjct: 206 AKKERFVPNEQRK-KDQKEVDAALLKVI 232
Score = 37.1 bits (82), Expect = 0.45
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 87 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNG 254
K P N L G++R+SK++M+ ++A Y+ VK+IGG KNG
Sbjct: 19 KHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNG 74
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 92.7 bits (220), Expect = 9e-18
Identities = 45/86 (52%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Frame = +2
Query: 254 GTRTVPLKRRKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRV 427
GTR V L++ +YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH GKRV
Sbjct: 103 GTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRV 162
Query: 428 VLVGILPSGLLLVTGPFAFNSCPLRR 505
V + L SGLLLVTGP N PLRR
Sbjct: 163 VFLKQLASGLLLVTGPLVLNRVPLRR 188
Score = 52.8 bits (121), Expect = 8e-06
Identities = 30/68 (44%), Positives = 38/68 (55%)
Frame = +1
Query: 490 VPATPYSQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 669
VP Q++VI TST+I + N K+PKH D YF EG +IF T+KEK
Sbjct: 184 VPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYF---KKKKLRKPRHQEG-EIFDTEKEK 239
Query: 670 YVPSEQRK 693
Y +EQRK
Sbjct: 240 YEITEQRK 247
Score = 33.1 bits (72), Expect = 7.3
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +3
Query: 96 RNYDLGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVKQIGGEKNG 254
RN L G+ R+S+S M+ +KA KY L V K +GG+KNG
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNG 102
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 79.0 bits (186), Expect = 1e-13
Identities = 42/85 (49%), Positives = 54/85 (63%)
Frame = +2
Query: 254 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 433
G R VP++R +YPT++ +R R + ++R ++ GTV ILLAG H GKRVV
Sbjct: 63 GKRVVPVQRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVF 120
Query: 434 VGILPSGLLLVTGPFAFNSCPLRRI 508
+ L SGLLLVTGPF N PLRRI
Sbjct: 121 LKQLNSGLLLVTGPFKINGVPLRRI 145
Score = 36.7 bits (81), Expect = 0.59
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 490 VPATPYSQRYVIGTSTRISLGNFKLPKH-FNDDYFXXXXXXXXXXXXXXEGDDIFATKKE 666
VP Q YVI TST I + + KLP+H F D+ + +D+F E
Sbjct: 140 VPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESY-----FKGEPKKKKRSEDMFEEAAE 194
Query: 667 KYVPSEQR 690
+ PSEQR
Sbjct: 195 EKKPSEQR 202
Score = 33.9 bits (74), Expect = 4.2
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +3
Query: 96 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGEPEQYPS 275
RN +L G+ R+S+S ++ K+A YK T K IGG+KNG P
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPV 69
Query: 276 NVGS---PSTPLRRK 311
S P+ +RR+
Sbjct: 70 QRESRYYPTEDVRRR 84
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 78.6 bits (185), Expect = 1e-13
Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 GTRTVPLKRRKSFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRV 427
G R +PLK+ + YPT++ + + +S +P S+ +R + GTV ILLAG H GKRV
Sbjct: 79 GKRVLPLKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRV 138
Query: 428 VLVGILPSGLLLVTGPFAFNSCPLRRI 508
V + L +GLL VTGP+ N CPLRRI
Sbjct: 139 VFLKQLKTGLLPVTGPYGVNGCPLRRI 165
Score = 45.2 bits (102), Expect = 0.002
Identities = 23/60 (38%), Positives = 30/60 (50%)
Frame = +3
Query: 93 PRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGEPEQYP 272
P+N+ L GV FS+SKMFHK+ +K V VK++ GEKNG P
Sbjct: 25 PKNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLP 84
Score = 40.3 bits (90), Expect = 0.048
Identities = 26/82 (31%), Positives = 43/82 (52%)
Frame = +1
Query: 493 PATPYSQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKY 672
P +Q YVI TST++ L KLP+ +D YF EG +IF K +++
Sbjct: 161 PLRRINQIYVIATSTKLDLSKVKLPEGLDDRYF--KRNKGPKRGRKDEG-EIFEAKPQEH 217
Query: 673 VPSEQRKTRFRRQSTRAVIKAI 738
V SE+ K + + + + V++A+
Sbjct: 218 VVSEEHK-KTQAEVDKQVLEAV 238
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 78.6 bits (185), Expect = 1e-13
Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Frame = +2
Query: 269 PLKRRKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 439
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H GKRV+ +
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLK 113
Query: 440 ILPSGLLLVTGPFAFNSCPLRRI 508
L SGLLLVTGPF +N PLRR+
Sbjct: 114 ALKSGLLLVTGPFKYNGVPLRRV 136
Score = 49.2 bits (112), Expect = 1e-04
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +1
Query: 475 FCFQFVPATPYSQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 654
F + VP +Q YVI TSTRI + F +PKH +D+YF + +F+
Sbjct: 126 FKYNGVPLRRVNQCYVIATSTRIDISKFDVPKHIDDEYF----RRVDLKESKTDAGKLFS 181
Query: 655 TKKEKYVPSEQRK--TRFRRQSTRAVIKA 735
T+ +KY S+ RK + RA IK+
Sbjct: 182 TETKKYTVSDIRKEDQKLVDNQIRAAIKS 210
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 74.1 bits (174), Expect = 3e-12
Identities = 42/83 (50%), Positives = 54/83 (65%)
Frame = +2
Query: 266 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 445
V L RRK+ K + GR ++ V ++R +LK G V ILL G + GKRVVL+ +L
Sbjct: 12 VKLNRRKTVVTRLGKTKVV--GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVL 68
Query: 446 PSGLLLVTGPFAFNSCPLRRILS 514
SGLLLVTGPF+FN PLRR+ S
Sbjct: 69 KSGLLLVTGPFSFNGVPLRRVNS 91
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 72.1 bits (169), Expect = 1e-11
Identities = 35/57 (61%), Positives = 41/57 (71%)
Frame = +2
Query: 338 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 508
F+ H RRIR ++ G V ILLAGRH KRVV + L SGLLLVTGPF +N PLRR+
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRV 142
Score = 52.8 bits (121), Expect = 8e-06
Identities = 31/87 (35%), Positives = 45/87 (51%)
Frame = +1
Query: 475 FCFQFVPATPYSQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 654
F + VP +QRYVI T TRI + N K+P ND++F D IFA
Sbjct: 132 FKYNGVPLRRVNQRYVIATKTRIKIKNIKIPSQLNDEFFRRQDLKTKKSV-----DKIFA 186
Query: 655 TKKEKYVPSEQRKTRFRRQSTRAVIKA 735
+++KY S+ RK + ++Q A+I A
Sbjct: 187 EEEKKYTVSDDRK-KLQKQVDTALIAA 212
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 72.1 bits (169), Expect = 1e-11
Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 GTRTVPLKRRKS--FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRV 427
G R +P +K+ +YP ++ + + + H ++RP+L+ GT+ ILLAGR GKRV
Sbjct: 19 GERVIPHPSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPGTILILLAGRFRGKRV 76
Query: 428 VLVGILPSGLLLVTGPFAFNSCPLRRI 508
+L+ L G+LLVTGPF N PLRR+
Sbjct: 77 ILLKHLGQGVLLVTGPFKLNGVPLRRV 103
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 70.9 bits (166), Expect = 3e-11
Identities = 38/85 (44%), Positives = 52/85 (61%)
Frame = +2
Query: 254 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 433
GTR V ++ FYP + + +K+ +IR +L+ GT+ ILLAG + GKRVVL
Sbjct: 56 GTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILILLAGVNRGKRVVL 115
Query: 434 VGILPSGLLLVTGPFAFNSCPLRRI 508
+ L SGLLLV+GP N PLRR+
Sbjct: 116 LKALKSGLLLVSGPLKVNRVPLRRV 140
Score = 58.4 bits (135), Expect = 2e-07
Identities = 32/68 (47%), Positives = 39/68 (57%)
Frame = +1
Query: 490 VPATPYSQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 669
VP Q+ VI TSTRI + N K+P+H ND YF EG DIFA+K E+
Sbjct: 135 VPLRRVHQKLVIATSTRIDISNVKVPEHINDTYF----RRHKVKKEAKEG-DIFASKPER 189
Query: 670 YVPSEQRK 693
Y P+EQRK
Sbjct: 190 YTPTEQRK 197
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 68.5 bits (160), Expect = 2e-10
Identities = 33/65 (50%), Positives = 45/65 (69%)
Frame = +2
Query: 314 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSC 493
R S R S ++R +L+ G VCILLAG + GKRVV++ LPSGL++VTGP+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 494 PLRRI 508
P+RR+
Sbjct: 80 PVRRV 84
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 68.5 bits (160), Expect = 2e-10
Identities = 37/83 (44%), Positives = 52/83 (62%)
Frame = +2
Query: 269 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 448
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L
Sbjct: 57 PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114
Query: 449 SGLLLVTGPFAFNSCPLRRILSA 517
SGLLLVTGPF N PLRR+ A
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQA 137
Score = 36.3 bits (80), Expect = 0.78
Identities = 28/83 (33%), Positives = 39/83 (46%)
Frame = +1
Query: 490 VPATPYSQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 669
VP +Q YVIGTST++ + L K F+D YF EG + F +KE+
Sbjct: 129 VPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF---GKVAEKKKKKTEG-EFFEAEKEE 183
Query: 670 YVPSEQRKTRFRRQSTRAVIKAI 738
Q K ++ A+IKAI
Sbjct: 184 KKEIPQGKKDDQKAVDAALIKAI 206
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 68.1 bits (159), Expect = 2e-10
Identities = 37/85 (43%), Positives = 50/85 (58%)
Frame = +2
Query: 254 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 433
G R VP K+ +YP +K + K + +RP++K GT+ ILLAG G RVV+
Sbjct: 34 GYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIVILLAGVFRGSRVVV 92
Query: 434 VGILPSGLLLVTGPFAFNSCPLRRI 508
+ L SG LLVTGP+A N PL R+
Sbjct: 93 LKQLDSGQLLVTGPYAVNRIPLTRV 117
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 65.7 bits (153), Expect = 1e-09
Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +2
Query: 290 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 466
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV + L SGLLLV
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 467 TGPFAFNSCPLRRI 508
TGPF N P+RR+
Sbjct: 110 TGPFKINGVPIRRV 123
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 64.1 bits (149), Expect = 3e-09
Identities = 37/85 (43%), Positives = 50/85 (58%)
Frame = +2
Query: 254 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 433
G R + K K +IR+++ + K +R ++ GTV I+LAGR AGKRVV
Sbjct: 54 GKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSITPGTVLIILAGRFAGKRVVA 111
Query: 434 VGILPSGLLLVTGPFAFNSCPLRRI 508
+ L SGL+L+TGPF N PLRRI
Sbjct: 112 LKQLDSGLILITGPFKVNGVPLRRI 136
Score = 35.1 bits (77), Expect = 1.8
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 490 VPATPYSQRYVIGTSTRISLGNFKLPKHFNDDYF 591
VP QRYVI TST+I + + K+ ND YF
Sbjct: 131 VPLRRIDQRYVIATSTKIDVSSVKVAATINDAYF 164
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 63.3 bits (147), Expect = 6e-09
Identities = 34/61 (55%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +2
Query: 332 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRR 505
RP K +R P + GTV ILLAGR GKRVVL+ L G+LLVTGPF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 506 I 508
+
Sbjct: 84 V 84
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 61.3 bits (142), Expect = 2e-08
Identities = 33/51 (64%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +2
Query: 359 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRI 508
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRI 117
Score = 46.0 bits (104), Expect = 0.001
Identities = 24/67 (35%), Positives = 35/67 (52%)
Frame = +1
Query: 493 PATPYSQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKY 672
P Q +VI TS ++++ K+P+H ND+YF G +IFA+ K +Y
Sbjct: 113 PLRRIGQAFVIATSLKVNVSGVKIPEHINDEYF------KRKSTAQKTGKNIFASGKTEY 166
Query: 673 VPSEQRK 693
SEQRK
Sbjct: 167 TVSEQRK 173
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 59.7 bits (138), Expect = 7e-08
Identities = 23/52 (44%), Positives = 37/52 (71%)
Frame = +2
Query: 353 RRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 508
R++R ++++G V I+L G+H GKR ++ +L SGLL V GP+ N PL+R+
Sbjct: 68 RKMRSSIQVGKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRV 119
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 58.0 bits (134), Expect = 2e-07
Identities = 35/69 (50%), Positives = 43/69 (62%)
Frame = +2
Query: 311 IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNS 490
+R RP + +R+I P G V ILL+GR GKRVV + L SGLLLVTGPF N
Sbjct: 44 VRKRKAPRPAT--LRKIVP----GQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKING 97
Query: 491 CPLRRILSA 517
PL+R+ SA
Sbjct: 98 VPLKRVNSA 106
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 56.0 bits (129), Expect = 9e-07
Identities = 31/78 (39%), Positives = 48/78 (61%)
Frame = +2
Query: 275 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 454
++ +YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + L
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 455 LLLVTGPFAFNSCPLRRI 508
LL++GPF N PLRR+
Sbjct: 62 TLLISGPFKVNGVPLRRV 79
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 54.0 bits (124), Expect = 4e-06
Identities = 27/42 (64%), Positives = 30/42 (71%)
Frame = +2
Query: 383 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 508
TV I+L GRH GKRVV + L SGLLLVTGP A N PL R+
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRM 54
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 46.8 bits (106), Expect = 6e-04
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = +2
Query: 359 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRI 508
+R + G + I+LAGR G+R V++ LP +G L+V+GP +N P+RRI
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRI 79
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 44.4 bits (100), Expect = 0.003
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +2
Query: 362 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 475
RP+LK+GTV I++ G H GKR V+V +G++ + GP
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGP 90
>UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_103, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 345
Score = 39.9 bits (89), Expect = 0.064
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 290 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 469
FYP + ++ + +K ++ +R ++ GTV I+LAGR VV + L SGLLL+T
Sbjct: 207 FYPADD-VKKPLINKHKAKPIK-LRASITPGTVLIILAGR-----VVFLKQLSSGLLLIT 259
Query: 470 GPFAFNSCPLRRILSAM*SAPPPE 541
G F N P S+ + PPE
Sbjct: 260 GSFKINDVP-HSFASSEATGFPPE 282
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 39.9 bits (89), Expect = 0.064
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 362 RPNLKIGTVCILLAGRHAGKRVVLVGILP 448
+P +K G VCI+L GRHAGK+ V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 39.9 bits (89), Expect = 0.064
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = +1
Query: 475 FCFQFVPATPYSQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 654
F VP +Q++V+ TST+I + K+P DDYF E DIF
Sbjct: 17 FSINGVPVRRIAQKFVLPTSTKIDVSGVKIPATMTDDYF------KRTKYFGKEKKDIFE 70
Query: 655 TKKEKYVPSEQRK 693
K++Y ++ RK
Sbjct: 71 QGKQEYTLTDARK 83
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 39.9 bits (89), Expect = 0.064
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +2
Query: 365 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 508
P + +G + +++AGR AG++VV+V I+ +LVTG N RR+
Sbjct: 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRM 48
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 39.5 bits (88), Expect = 0.084
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 365 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 508
P +++G VCI AGR AGK V+V IL ++V G C ++ +
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLVKRRRCNIKHL 49
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 39.1 bits (87), Expect = 0.11
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = +2
Query: 419 KRVVLVGILPSGLLLVTGPFAFNSCPLRRILSA 517
KRVV + L SGLLL+TG F N PLRR+ A
Sbjct: 156 KRVVFLKQLSSGLLLITGSFKINGVPLRRVNQA 188
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 38.3 bits (85), Expect = 0.19
Identities = 29/84 (34%), Positives = 43/84 (51%)
Frame = +2
Query: 254 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 433
GT V L++ K + + + + S P KH + + N TV I++ G+H +RVV
Sbjct: 100 GTGVVKLQKMKMYLGSCKAMAKS----PAFKHEKAVC-NSTPETVLIIITGQH--RRVVF 152
Query: 434 VGILPSGLLLVTGPFAFNSCPLRR 505
+ L G LL+TGP A N L R
Sbjct: 153 LKQLSRGFLLITGPLALNLVLLYR 176
>UniRef50_A6QSD0 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 906
Score = 35.5 bits (78), Expect = 1.4
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
Frame = +2
Query: 299 TQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPF 478
+Q A S + + R I+ L + + +L+ RH R VL+ P P
Sbjct: 179 SQTSTPAGSSMKSAQQSQREIKHPLPVNSAAAVLSSRHNHGRAVLLR-RPKAESDHVEPL 237
Query: 479 AFNSCPLR---RILSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTS 649
+ C R R L S P + + C N++ ++ +R++ N S AK +
Sbjct: 238 PGSPCLNRTTARPLHLRASHPAISNNDVNNMCSNSTSVVQGYSLRNSWNHNSFAKSQFEA 297
Query: 650 LPQ-KKRNTFHLSSAKPD 700
LP +R+T++ +S +P+
Sbjct: 298 LPLCPQRDTYYANSEEPE 315
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 35.5 bits (78), Expect = 1.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 371 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 508
+ IG V + + GR AG++ V+V I+ +++TGP RR+
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRV 50
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 35.1 bits (77), Expect = 1.8
Identities = 25/68 (36%), Positives = 35/68 (51%)
Frame = +2
Query: 305 EKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAF 484
EK +A + +P VRR +L G V ++L G A +RVV + L + L GP +
Sbjct: 10 EKYKARTARKP---RVRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSI 64
Query: 485 NSCPLRRI 508
N PL RI
Sbjct: 65 NGIPLFRI 72
>UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas syringae pv. syringae
(strain B728a)
Length = 676
Score = 33.9 bits (74), Expect = 4.2
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 329 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 487
GR ++ R++RP LK+ + + G +A V G L +G+ L+T PFAF+
Sbjct: 617 GRQLAEIARQLRPELKV----LFITG-YAEHAAVRGGFLDTGMQLITKPFAFD 664
>UniRef50_UPI0000F1E6DB Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 509
Score = 33.5 bits (73), Expect = 5.5
Identities = 26/79 (32%), Positives = 37/79 (46%)
Frame = -3
Query: 460 KQTAGQNSNKYNPLACMSTSEENANSSYLQVGSDPAYMLAEWTATR*STDFLLSGVEGLP 281
+++ GQN Y P T + N+ L + DPA L + T +D V+ P
Sbjct: 40 QRSDGQNM-LYTPETAHMTIALHDNTQILYITDDPAQTL-QATHIVYQSD---PAVQQDP 94
Query: 280 TFEGYCSGSPFFSPPICFT 224
F+GY SP F+PP FT
Sbjct: 95 HFDGYFHASPAFNPPPVFT 113
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 5.5
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 444 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 310
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_A4JKJ0 Cluster: Diguanylate cyclase; n=1; Burkholderia
vietnamiensis G4|Rep: Diguanylate cyclase - Burkholderia
vietnamiensis (strain G4 / LMG 22486)
(Burkholderiacepacia (strain R1808))
Length = 413
Score = 33.1 bits (72), Expect = 7.3
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 389 CILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRILSAM*SA 529
C GR A V++V +LP G+ LV +A +S PLR +++ + +A
Sbjct: 106 CARFLGRPAHWPVLMVSLLPLGIALVYWRYAVDSIPLRVLVTTLFTA 152
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 33.1 bits (72), Expect = 7.3
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 260 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 376
R LK SF P + + ASS GRP K +R+R LK
Sbjct: 133 REEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 726,006,080
Number of Sequences: 1657284
Number of extensions: 14164333
Number of successful extensions: 38715
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 37109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38662
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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