Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30416
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    55   9e-09
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    31   0.17 
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    26   4.9  
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    25   8.5  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   8.5  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 27/51 (52%), Positives = 36/51 (70%)
 Frame = +2

Query: 356 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 508
           ++R +L  GTVCILLAGR  GKRVV++  L    L+VTGP+  N  P+RR+
Sbjct: 47  KLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRV 96


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 438 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 304
           P S+ + P  LP+RR +T  I  L  ++  CLL    P  +R FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = +2

Query: 566 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKP 697
           +NTS  +T   IRS SN   + K + T LP+ K+N F  S+++P
Sbjct: 180 ENTSGDLT---IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQP 218


>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 81  STKKPRNYDLGNGVMRFSKSKMFHKKAKY 167
           S K+P+N D+ + +++    K   KK+KY
Sbjct: 249 SKKRPQNSDITSSLLKKPNRKQATKKSKY 277


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 81  STKKPRNYDLGNGVMRFSKSKMF 149
           +TK PRN+ L N ++RFS   +F
Sbjct: 289 NTKGPRNFVLENHLVRFSSLYIF 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,737
Number of Sequences: 5004
Number of extensions: 58311
Number of successful extensions: 206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)