Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30416
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    65   5e-11
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    64   1e-10
02_02_0470 - 10700092-10700505                                         30   2.2  
10_08_0951 - 21769342-21769752                                         29   5.1  
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431           29   5.1  
03_02_0196 - 6335985-6336422                                           29   5.1  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = +2

Query: 290 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 466
           FYP  + K RA S  +    +  ++R  +  GTV ILLAGR+ GKRVV +  L SGLLL+
Sbjct: 50  FYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106

Query: 467 TGPFAFNSCPLRRILSA 517
           TGPF  N  P+RR+  A
Sbjct: 107 TGPFKINGVPIRRVNQA 123



 Score = 32.3 bits (70), Expect = 0.41
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 490 VPATPYSQRYVIGTSTRISLGNFKLPKHFNDDYF 591
           VP    +Q YVI TST++ +   K+ K F+D YF
Sbjct: 115 VPIRRVNQAYVIATSTKVDISGVKVDK-FDDKYF 147


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
 Frame = +2

Query: 296 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 469
           PT+ +  +SS    FS  + +  +R ++  GTV ILLAGR  GKRVV +  L SGLLLVT
Sbjct: 71  PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130

Query: 470 GPFAFNSCPLRRI 508
           GPF  N  P+RR+
Sbjct: 131 GPFKINGVPIRRV 143



 Score = 31.1 bits (67), Expect = 0.95
 Identities = 25/83 (30%), Positives = 38/83 (45%)
 Frame = +1

Query: 490 VPATPYSQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 669
           VP    +Q YVI TST++ +    + K F+D YF              EG ++F T+KE 
Sbjct: 138 VPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF---SRDKKQKAKKTEG-ELFETEKEA 192

Query: 670 YVPSEQRKTRFRRQSTRAVIKAI 738
                + K   ++     +IKAI
Sbjct: 193 TKNLPEFKKEDQKVVDAELIKAI 215


>02_02_0470 - 10700092-10700505
          Length = 137

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 371 LKIGTVCILLAGRHAGKRVVLVGILPSG 454
           LK G   ILL GR+AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRYAGRKAVIVRVFEEG 32


>10_08_0951 - 21769342-21769752
          Length = 136

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 371 LKIGTVCILLAGRHAGKRVVLVGILPSG 454
           LK G   ILL GR AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRFAGRKAVIVRVFEEG 32


>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
          Length = 370

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 557 SNCQNTS-MMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPDSEDS 712
           S C +TS    T + +   +N+ SNA+       + ++N  H+ +A   +EDS
Sbjct: 283 SGCASTSDQSATHKEVMPPNNLLSNARLKKKEEQKTRQNALHVGAATQVAEDS 335


>03_02_0196 - 6335985-6336422
          Length = 145

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = -1

Query: 735 GFDHSPRRLSSESGFA----LLRWNVFLFF 658
           GF H P+R SS++G      LL W+  LFF
Sbjct: 98  GFRHQPQRSSSQAGLGEYKRLLGWDAALFF 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,494,024
Number of Sequences: 37544
Number of extensions: 420668
Number of successful extensions: 1075
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)