Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30416
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               37   0.020
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)                28   9.1  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +1

Query: 490 VPATPYSQRYVIGTSTRISLGNFKLPKH-FNDDYFXXXXXXXXXXXXXXEGDDIFATKKE 666
           VP     Q YVI TST I + + KLP+H F D+ +                +D+F    E
Sbjct: 8   VPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESY-----FKGEPKKKKRSEDMFEEAAE 62

Query: 667 KYVPSEQR 690
           +  PSEQR
Sbjct: 63  EKKPSEQR 70


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 364 TQPEDRNCLHSPRW*TCRQEGCTCWN-SAQRSAFSYWTFCFQFVPATPYS 510
           TQ   R   HSPR   CR   CT +N    +   S+ T C +  P   +S
Sbjct: 84  TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPVGHFS 133


>SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 412 CRQEGCTCWNSAQRSAFSYWTFCFQFVPATPYSQRYVIGTSTRISLGNFKL 564
           C + GC  W+ ++ S+  + T CF+       S R      TR+  G+ +L
Sbjct: 480 CLKRGCE-WSQSELSSCRWPTVCFECGTMVELSDRTQSRARTRLETGSIRL 529


>SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)
          Length = 204

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 467 TGPFAFNSCPLRRILSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 646
           T   A N+C  RR    +  A       AT+NC+  +  +   +  +A    +N +R   
Sbjct: 92  TAEGATNNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGATNNCRRRNE 149

Query: 647 SLPQKKRNT 673
            LP+ +R T
Sbjct: 150 QLPKAQRTT 158



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 467 TGPFAFNSCPLRRILSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 646
           T   A N+C  RR    +  A       AT+NC+  +  +   +  +A    +N +R   
Sbjct: 114 TAEGATNNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGTTNNCRRHNE 171

Query: 647 SLPQKKRNT 673
            LP+ +R T
Sbjct: 172 QLPKAQRTT 180


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +1

Query: 256 NQNSTPQ---T*EVLLPHSGENPCFIWWPSIQQACTQDPTQP 372
           NQ++ PQ   T  VL+PH G  PC   +P+         TQP
Sbjct: 94  NQSTLPQGNATQWVLIPHKGSMPCIGTFPNAINTWIIPGTQP 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,804,319
Number of Sequences: 59808
Number of extensions: 459124
Number of successful extensions: 1429
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)