Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30416
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    61   7e-10
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.85 
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    29   2.6  
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    29   2.6  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 33/51 (64%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
 Frame = +2

Query: 359 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRI 508
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRI 117



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 24/67 (35%), Positives = 35/67 (52%)
 Frame = +1

Query: 493 PATPYSQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKY 672
           P     Q +VI TS ++++   K+P+H ND+YF               G +IFA+ K +Y
Sbjct: 113 PLRRIGQAFVIATSLKVNVSGVKIPEHINDEYF------KRKSTAQKTGKNIFASGKTEY 166

Query: 673 VPSEQRK 693
             SEQRK
Sbjct: 167 TVSEQRK 173



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 96  RNYDLGNGVMRFSKSKMFHKKAKYK 170
           RN+DL  GV+RFS S++  KK + K
Sbjct: 12  RNFDLSPGVLRFSASRLRLKKGEKK 36


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 290 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 424
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 617  VQSNAKRVMTSLPQKKRNTFHLSSAKPDS 703
            + +NA R+MT LP    N  HLS+A+ D+
Sbjct: 1888 LSANACRIMTQLPINPSNIEHLSTAEDDT 1916


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
            protein F07B7.12 protein.
          Length = 1900

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 617  VQSNAKRVMTSLPQKKRNTFHLSSAKPDS 703
            + +NA R+MT LP    N  HLS+A+ D+
Sbjct: 1824 LSANACRIMTQLPINPSNIEHLSTAEDDT 1852


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,748,160
Number of Sequences: 27780
Number of extensions: 338900
Number of successful extensions: 860
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)