Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30416
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = +2

Query: 485 NSCPLRRILSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLP 655
           +S P   + +A+ S PPP F  +  +  + S ++++ R  +   +  +A   M  +P
Sbjct: 365 SSIPKLNLSTALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIP 421


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 248 EWGTRTVPLKRRKSFYP 298
           EW    VP +R K +YP
Sbjct: 200 EWDILGVPAERHKKYYP 216


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 248 EWGTRTVPLKRRKSFYP 298
           EW    VP  R + +YP
Sbjct: 214 EWDILEVPASRNEEYYP 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,807
Number of Sequences: 438
Number of extensions: 4304
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)