Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30416
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    69   4e-12
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    69   4e-12
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    66   3e-11
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   1.8  
At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase, p...    29   3.2  
At5g43310.1 68418.m05293 COP1-interacting protein-related contai...    28   5.6  
At5g19360.1 68418.m02307 calcium-dependent protein kinase, putat...    27   9.8  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 37/83 (44%), Positives = 52/83 (62%)
 Frame = +2

Query: 269 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 448
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114

Query: 449 SGLLLVTGPFAFNSCPLRRILSA 517
           SGLLLVTGPF  N  PLRR+  A
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQA 137



 Score = 36.3 bits (80), Expect = 0.021
 Identities = 28/83 (33%), Positives = 39/83 (46%)
 Frame = +1

Query: 490 VPATPYSQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 669
           VP    +Q YVIGTST++ +    L K F+D YF              EG + F  +KE+
Sbjct: 129 VPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF---GKVAEKKKKKTEG-EFFEAEKEE 183

Query: 670 YVPSEQRKTRFRRQSTRAVIKAI 738
                Q K   ++    A+IKAI
Sbjct: 184 KKEIPQGKKDDQKAVDAALIKAI 206


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 37/83 (44%), Positives = 52/83 (62%)
 Frame = +2

Query: 269 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 448
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114

Query: 449 SGLLLVTGPFAFNSCPLRRILSA 517
           SGLLLVTGPF  N  PLRR+  A
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQA 137



 Score = 35.9 bits (79), Expect = 0.028
 Identities = 28/83 (33%), Positives = 39/83 (46%)
 Frame = +1

Query: 490 VPATPYSQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 669
           VP    +Q YVIGTST++ +    L K F+D YF              EG + F  +KE+
Sbjct: 129 VPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF---GKVAEKKKKKTEG-EFFEAEKEE 183

Query: 670 YVPSEQRKTRFRRQSTRAVIKAI 738
                Q K   ++    A+IKAI
Sbjct: 184 KKEIPQVKKDDQKAVDAALIKAI 206


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 36/83 (43%), Positives = 51/83 (61%)
 Frame = +2

Query: 269 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 448
           P+++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLS 114

Query: 449 SGLLLVTGPFAFNSCPLRRILSA 517
           SGLLLVTGPF  N  PLRR+  A
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQA 137



 Score = 35.9 bits (79), Expect = 0.028
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = +1

Query: 490 VPATPYSQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKE- 666
           VP    +Q YVIGTST+I +      K F+D YF              EG+   A K+E 
Sbjct: 129 VPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYF---GKVAEKKKKKTEGEFFEAEKEEK 184

Query: 667 KYVPSEQRKTRFRRQSTRAVIKAI 738
           K +P E+++   ++    A+IK+I
Sbjct: 185 KEIPQEKKED--QKTVDAALIKSI 206


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 269 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 358
           P++RR+S  P +E++  S GGR  S  H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555


>At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase,
           putative similar to AOP1 [Arabidopsis
           lyrata][GI:16118889]; contains Pfam profile PF03171:
           2OG-Fe(II) oxygenase superfamily domain
          Length = 317

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 499 TPYSQRYVIGTSTRISLGNFKLPK 570
           +PY +  + GT TR SLG F +PK
Sbjct: 244 SPYHRVMMTGTETRYSLGLFSIPK 267


>At5g43310.1 68418.m05293 COP1-interacting protein-related contains
           similarity to COP1-Interacting Protein 7 (CIP7)
           [Arabidopsis thaliana] GI:3327868
          Length = 1237

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -3

Query: 445 QNSNKYNPLACMSTSEENANSSYLQVGSDPAYMLAEWTATR*STDF-LLSG--VEGLPTF 275
           +NS+  +P    + ++ N N  Y+Q G     M A W        F +  G  ++G+P +
Sbjct: 334 ENSDAKSP----TDNKRNGNQEYVQ-GQHRQPMYAPWPVHSPPGTFPVFQGYTMQGMPYY 388

Query: 274 EGYCSGSPFFSP 239
            GY   SP+ SP
Sbjct: 389 PGYPGASPYPSP 400


>At5g19360.1 68418.m02307 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Marchantia polymorpha] gi|5162877|dbj|BAA81748
          Length = 523

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 543 NSGGGADHIALRIRRSGHELKAKGPVTKSRPLGRI 439
           N GGG       +R S H   +  P TK  P+G +
Sbjct: 22  NGGGGVGAAEASVRASKHPPASPPPATKQGPIGPV 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,951,373
Number of Sequences: 28952
Number of extensions: 318844
Number of successful extensions: 854
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)