Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30415
         (590 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    26   0.27 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.5  

>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 387 MKIRFCIFIHSRRINRGNFSQF 452
           M  R CI I S R N  NFS+F
Sbjct: 1   MSTRICIPISSGRTNGSNFSKF 22


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 576 NKGDPVNKPPP 544
           + GDP+++PPP
Sbjct: 129 HNGDPLSQPPP 139


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 576 NKGDPVNKPPP 544
           + GDP+++PPP
Sbjct: 21  HNGDPLSQPPP 31


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,333
Number of Sequences: 336
Number of extensions: 2885
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)