Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30415
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    97   2e-21
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    30   0.22 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   8.3  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    25   8.3  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 45/84 (53%), Positives = 54/84 (64%)
 Frame = +2

Query: 2   TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXX 181
           +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++SHII      K  F  
Sbjct: 218 SDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKPIFGK 276

Query: 182 XXXXXXXXXXXXXXFIV*AHHIFT 253
                          +V +HH+FT
Sbjct: 277 EGMLWAMLSIALLGLMVWSHHLFT 300



 Score = 81.4 bits (192), Expect = 9e-17
 Identities = 39/67 (58%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
 Frame = +1

Query: 256 GIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN-PNIL*RLGFVFLFTVGGLT 432
           G+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   +L  +GF+ LFT+GGLT
Sbjct: 302 GLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLT 361

Query: 433 GGILANS 453
           G IL+NS
Sbjct: 362 GVILSNS 368


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 461 GYYITLVPFMGRRPFPYALPRGRSICNYG 547
           GYYI  VPF G +   + +P G+++  YG
Sbjct: 685 GYYIVDVPFDGTQAVLFNIPDGKTVNRYG 713


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 572 KGIRLINPPHNCKYC 528
           KG  L+N P NCK C
Sbjct: 251 KGRALLNEPSNCKVC 265


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 459 LGITLHWYLLWVGAHSHMPSQGGAVFAIMGGVY*PDPL 572
           LG+  H       A+   P Q G VF +  G+Y PD +
Sbjct: 386 LGLEEHEQTYLNPANKGTPVQKGNVFTVEPGIYIPDEI 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,178
Number of Sequences: 5004
Number of extensions: 42102
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)