Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30415
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   91   8e-19
SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)                 29   2.8  
SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)                      27   8.7  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 90.6 bits (215), Expect = 8e-19
 Identities = 46/74 (62%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
 Frame = +1

Query: 259 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGG 438
           +++DTRAYFT+AT+IIAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTG 
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60

Query: 439 ILANSS-HWVLHYT 477
           ILANSS   V+H T
Sbjct: 61  ILANSSLDVVMHDT 74


>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
          Length = 959

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 3/129 (2%)
 Frame = +1

Query: 58  FISTFILIFWTS*SLYFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVIRIHCLS 237
           FI ++  +  ++ SL+ N TR  Y F  Y   + K         +  YT     RI    
Sbjct: 600 FIESYEYVILSNKSLFHNATRRVYQFDQYTVNENKTATICSNFTDKSYTKKQ--RIEIGG 657

Query: 238 SSYIH*GIDIDTR-AYFTSATIIIAVPTGIKIFR*LATIHGTQ-INYNPNIL*RLGFVFL 411
           SS +   + + T      S   ++ V     +F  L T  G   +N + +IL      FL
Sbjct: 658 SSNVELALTVLTYVGLILSVACLLVVVVTYSLFSELRTAPGVNLLNLSISILLA---QFL 714

Query: 412 FTVG-GLTG 435
           F VG G TG
Sbjct: 715 FLVGSGQTG 723


>SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 402 CIFIHSRRINRGNFSQ--FFPLGIT-LHWYLLWVGAHSH 509
           C+   S+RI + NF+   F  + I+ LHW L W G  +H
Sbjct: 72  CVRYTSQRIMKMNFNHPGFTSIVISMLHWRLFWPGKDTH 110


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 512 ALPRGRSICNYGGGLLTGSPL-FTGP 586
           A P  R   NYGGG L G P  F GP
Sbjct: 907 ACPADRVCINYGGGYLCGCPAGFYGP 932


>SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)
          Length = 371

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 85  WTS*SLYFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVI 219
           W++  LY   + +W N   Y      + N  L+ N+ C  SN VI
Sbjct: 326 WSNAVLYTYHSCLWSNAVLYTNHSCLRSNAVLYTNHSCLRSNAVI 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,418,045
Number of Sequences: 59808
Number of extensions: 296725
Number of successful extensions: 517
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)