Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30414
         (865 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       27   0.19 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    26   0.33 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.3  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   7.1  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   7.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.4  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 24/82 (29%), Positives = 40/82 (48%)
 Frame = +2

Query: 29  VDYAGPVSCASRTGRGCRLIKSYIAIFVCFTTKAVHLELVGNLTSNNYLLALRRFISRRG 208
           VD+ GP+     TGR   L  SY+ + +   +K + L  +   T+      L    S   
Sbjct: 203 VDFYGPLP----TGR---LGASYVFVVIDVFSKFLKLYPLRKATAKIAAKRLIEDFSGYI 255

Query: 209 KPRDIFSDNGTSFVGDIMTYRN 274
           KP+ + SD+GT F+ +  T++N
Sbjct: 256 KPKCVLSDHGTQFISN--TWQN 275


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 659 PKMLAYLFNPLITCEPGNRVFLKVPFGQGSERPADKEMTW 540
           P  + + FN   T +PGN VFLK     G+  P   E+TW
Sbjct: 413 PPQIRHAFNEE-TVQPGNSVFLKC-IASGNPTP---EITW 447


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 439 FEELTTALVQIEAILNSRPLTPLYQTQKT 525
           F E  T L++ +  L S  L   Y+TQKT
Sbjct: 746 FSEFMTKLLEFDVKLQSDRLMIDYKTQKT 774


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 382 GVKSTKHHLNRVLGNCNL 435
           G  ST H   R+LG C++
Sbjct: 271 GGTSTNHQRGRILGGCHI 288


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/26 (26%), Positives = 12/26 (46%)
 Frame = -1

Query: 718  HDRHFIRCWSWATYSLHHRVQKCWRI 641
            H   F+  W++    L     KCW++
Sbjct: 1502 HVLQFLEKWNFDGLDLDWEYPKCWQV 1527



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -1

Query: 718  HDRHFIRCWSWATYSLHHRVQKCWRI 641
            H   FI  W++    L     KCW++
Sbjct: 2425 HVLAFIEEWNFDGLDLDWEYPKCWQV 2450


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 201 VEESLETYFQTTVPH 245
           VE+   TYF  T PH
Sbjct: 342 VEDKYTTYFLNTYPH 356


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 170 YLLALRRFISRRGKPR 217
           YL ALR ++  R KP+
Sbjct: 484 YLEALRAYVDNRRKPK 499


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,559
Number of Sequences: 336
Number of extensions: 4746
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23789590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)